RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 RGS9O75916 674 aaPredicted RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 RPS2P15880 293 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 MAGEB1P43366 347 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 OR2B8PP59922 312 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 GK2Q14410 553 aaPredicted RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 EXOSC7Q15024 291 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 DEFB110Q30KQ9 67 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 TEX261Q6UWH6 196 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 FAM220AQ7Z4H9 259 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 NAA40Q86UY6 237 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 COMMD2Q86X83 199 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 GPR135Q8IZ08 494 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 OR5T2Q8NGG2 359 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 ARRDC3Q96B67 414 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 RBM18Q96H35 190 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 CMSS1Q9BQ75 279 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 PCBD2Q9H0N5 130 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 DPEP2Q9H4A9 486 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 SYNPO2LQ9H987 977 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 HINT3Q9NQE9 182 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 NDUFB11Q9NX14 153 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 EXO1Q9UQ84 846 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 U3KQ87 197 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 TCRBV16S1A1N1A0A5B0 115 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 UNC119BA6NIH7 251 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 GTPBP1O00178 669 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 FOXE1O00358 373 aaPredicted RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 ADRB1P08588 477 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 FAUP35544 74 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 IRS1P35568 1242 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 SLC7A9P82251 487 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 GLT8D1Q68CQ7 371 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 TMEM215Q68D42 235 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 FAM111BQ6SJ93 734 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 ADIPOR2Q86V24 386 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 ATCAYQ86WG3 371 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 GTPBP8Q8N3Z3 284 aaPredicted RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 OR4C15Q8NGM1 316 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 SETD7Q8WTS6 366 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 NXPE3Q969Y0 559 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 PRO1933Q9H354 126 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 TRPV4Q9HBA0 871 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 TAS2R10Q9NYW0 307 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 FARSAQ9Y285 508 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 DICER1Q9UPY3 1922 aaKnown RBP11.11□□□□□ -0.63
HMGB1-206ENST00000405805 DOCK6Q96HP0 2047 aa11.11□□□□□ -0.63
HMGB1-206ENST00000405805 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 AIFM1O95831 613 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 TUBG1P23258 451 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 VAMP1P23763 118 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 GABRA5P31644 462 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 MMP12P39900 470 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 SSTP61278 116 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 GPR176Q14439 515 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 SF3A2Q15428 464 aaKnown RBP11.1□□□□□ -0.63
HMGB1-206ENST00000405805 ZNF676Q8N7Q3 588 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 OR1M1Q8NGA1 313 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 PAQR8Q8TEZ7 354 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 CASTOR1Q8WTX7 329 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 CHAC2Q8WUX2 184 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 TSEN15Q8WW01 171 aaKnown RBP11.1□□□□□ -0.63
HMGB1-206ENST00000405805 GIMAP5Q96F15 307 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 GPA33Q99795 319 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 MS4A8Q9BY19 250 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 ZDHHC5Q9C0B5 715 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 B3GNT4Q9C0J1 378 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 BABAM2Q9NXR7 383 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 NOP16Q9Y3C1 178 aaKnown RBP11.1□□□□□ -0.63
HMGB1-206ENST00000405805 CACNG2Q9Y698 323 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 AP1M2Q9Y6Q5 423 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 SLC9B1P1A6NJY1 282 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 ACOD1A6NK06 481 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 H7C1Q1 480 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 DVL2O14641 736 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 RNF224P0DH78 156 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 PVRP15151 417 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 CEBPBP17676 345 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 MNDAP41218 407 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 PDX1P52945 283 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 C19orf57Q0VDD7 668 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 PRSS53Q2L4Q9 553 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 TCTE1Q5JU00 501 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 SLC25A24Q6NUK1 477 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 FAAP20Q6NZ36 180 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 TSEN54Q7Z6J9 526 aaKnown RBP11.1□□□□□ -0.63
HMGB1-206ENST00000405805 TMEM99Q8N816 258 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 PTCHD1Q96NR3 888 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 CHST8Q9H2A9 424 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 ANXA2P2A6NMY6 339 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 RCBTB2O95199 551 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 TIMP1P01033 207 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 MAS1P04201 325 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 ANXA2P07355 339 aaKnown RBP11.1□□□□□ -0.63
HMGB1-206ENST00000405805 ADRA2AP08913 450 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 PTHLHP12272 177 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 RGS19P49795 217 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 MECP2P51608 486 aaKnown RBP11.1□□□□□ -0.63
HMGB1-206ENST00000405805 AP3S2P59780 193 aa11.1□□□□□ -0.63
HMGB1-206ENST00000405805 ELAVL3Q14576 367 aaKnown RBP11.1□□□□□ -0.63
HMGB1-206ENST00000405805 PON3Q15166 354 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms