RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 SWT1Q5T5J6 900 aaKnown RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 SLC30A6Q6NXT4 461 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 TMEM154Q6P9G4 183 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SMARCD3Q6STE5 483 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 CASP12Q6UXS9 341 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ATG4DQ86TL0 474 aaPredicted RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 KIF18BQ86Y91 864 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 CCDC71Q8IV32 467 aaPredicted RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 LRRC17Q8N6Y2 441 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 WDSUB1Q8N9V3 476 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 OR13C2Q8NGS9 318 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 FANK1Q8TC84 345 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SLC39A7Q92504 469 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SGCZQ96LD1 299 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SAMD8Q96LT4 415 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 NPAS1Q99742 590 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 FAM117AQ9C073 453 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 TMEM185BQ9H7F4 350 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 AMBNQ9NP70 447 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 TBC1D23Q9NUY8 699 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 LRFN1Q9P244 771 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SCOCQ9UIL1 159 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 MYRFQ9Y2G1 1151 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 RPH3AQ9Y2J0 694 aaPredicted RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 PCSK5Q92824 1860 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SVILO95425 2214 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 A0A0G2JMM0 328 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 A0A1W2PPB8 328 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 A0A1W2PRS3 328 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ZC3H12DA2A288 527 aaKnown RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 ANKUB1A6NFN9 424 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 KIR3DP1A8MWS1 328 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 H3BML4 177 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 BLOC1S5-TXNDC5H3BN57 136 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ADAM10O14672 748 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 XPNPEP2O43895 674 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SLC34A2O95436 690 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 WDPCPO95876 746 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 PEPDP12955 493 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 BMP7P18075 431 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SDHBP21912 280 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 GGT2P36268 569 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 CASRP41180 1078 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 RBM34P42696 430 aaKnown RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 GIPRP48546 466 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 RRADP55042 308 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 CDH15P55291 814 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 FOXK1P85037 733 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 PRKCDQ05655 676 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SMN1Q16637 294 aaKnown RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 DEFB109BQ30KR1 87 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 C1QL3Q5VWW1 255 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 JMJD6Q6NYC1 403 aaPredicted RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 IGF2-ASQ6U949 168 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 RTL4Q6ZR62 310 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 RASSF6Q6ZTQ3 369 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 PTCHD4Q6ZW05 846 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 GRINAQ7Z429 371 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ENTHD1Q8IYW4 607 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 PSD4Q8NDX1 1056 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 PAQR8Q8TEZ7 354 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 TMEM234Q8WY98 164 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 OTULINQ96BN8 352 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SLC25A36Q96CQ1 311 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 KTI12Q96EK9 354 aaPredicted RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 SGTBQ96EQ0 304 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 UTP23Q9BRU9 249 aaKnown RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 TSSK6Q9BXA6 273 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 OR11A1Q9GZK7 315 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 PTGES2Q9H7Z7 377 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 KLHL1Q9NR64 748 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 MED17Q9NVC6 651 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 GPR83Q9NYM4 423 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ABI3Q9P2A4 366 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 RNF6Q9Y252 685 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 TMEM5Q9Y2B1 443 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ATMQ13315 3056 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 IGKV1D-42A0A075B6H8 117 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 TMED7-TICAM2A0A0A6YYA0 188 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ZAR1LA6NP61 321 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 FAM47E-STBD1D6RA91 191 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 TLX2O43763 284 aaPredicted RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 SUSD5O60279 629 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SERPINI2O75830 405 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 TP53P04637 393 aaPredicted RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 TFPIP10646 304 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 PRKCAP17252 672 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 CD96P40200 585 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 RFC3P40938 356 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SLC9A3P48764 834 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 HLCSP50747 726 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 POLR2HP52434 150 aaKnown RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 NUDT6P53370 316 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 FOXF1Q12946 379 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 CDK5R2Q13319 367 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SNTA1Q13424 505 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 IL18R1Q13478 541 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SNAPC1Q16533 368 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 C6orf141Q5SZD1 244 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SLC35F1Q5T1Q4 408 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms