RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SYT13Q7L8C5 426 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 CPXM2Q8N436 756 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 ISG20Q96AZ6 181 aaKnown RBP6.73□□□□□ -1.33
UPF2-203ENST00000397053 LGALS12Q96DT0 336 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 RBMXL1Q96E39 390 aaKnown RBP6.73□□□□□ -1.33
UPF2-203ENST00000397053 MOCOSQ96EN8 888 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 MSANTD3Q96H12 275 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 PRRC1Q96M27 445 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 LRFN5Q96NI6 719 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 FCRL3Q96P31 734 aaPredicted RBP6.73□□□□□ -1.33
UPF2-203ENST00000397053 UHRF2Q96PU4 802 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 NMNAT2Q9BZQ4 307 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 PITHD1Q9GZP4 211 aaPredicted RBP6.73□□□□□ -1.33
UPF2-203ENST00000397053 RNF38Q9H0F5 515 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 ELOVL3Q9HB03 270 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 ARMC1Q9NVT9 282 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 CACNA1EQ15878 2313 aa6.73□□□□□ -1.33
UPF2-203ENST00000397053 MROH6A6NGR9 719 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 SOCS6O14544 535 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 HSPB6O14558 160 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 SPINT2O43291 252 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 ZIC2O95409 532 aaPredicted RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 OLFM2O95897 454 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 FABP1P07148 127 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 TNFRSF1BP20333 461 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 DCTP40126 519 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 RPS5P46782 204 aaKnown RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 GPR18Q14330 331 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 TMEM236Q5W0B7 351 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 TANGO2Q6ICL3 276 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 KLHDC10Q6PID8 442 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 SLC22A25Q6T423 547 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 HTR3DQ70Z44 454 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 OVCH1Q7RTY7 1134 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 GPR26Q8NDV2 337 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 SARAFQ96BY9 339 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 MRI1Q9BV20 369 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 BTBD2Q9BX70 525 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 P2RY12Q9H244 342 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 DMRT3Q9NQL9 472 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 SMCO4Q9NRQ5 59 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 SLC6A5Q9Y345 797 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 KAT6AQ92794 2004 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 F6UZH7 168 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 AGPAT2O15120 278 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 EEDO75530 441 aaKnown RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 CRYAAP02489 173 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 CPMP14384 443 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 TBPP20226 339 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 BCKDHBP21953 392 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 PSMB10P40306 273 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 VEGFCP49767 419 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 RAC1P63000 192 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 RNF4P78317 190 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 ZXDBP98169 803 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 MAT1AQ00266 395 aaKnown RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 HNF4GQ14541 408 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 CNPY1Q3B7I2 92 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 GAREM2Q75VX8 874 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 NOXA1Q86UR1 476 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 LRRTM3Q86VH5 581 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 SPARTQ8N0X7 666 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 C19orf47Q8N9M1 422 aaKnown RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 APH1AQ96BI3 265 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 MRPL38Q96DV4 380 aaKnown RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 CHFRQ96EP1 664 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 THOC3Q96J01 351 aaKnown RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 MFRPQ9BY79 579 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 LIN7BQ9HAP6 207 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 HEYLQ9NQ87 328 aaPredicted RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 TMEM45AQ9NWC5 275 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 ZNF337Q9Y3M9 751 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 PTGER1P34995 402 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 CTSCP53634 463 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 EMP3P54852 163 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 CXCR4P61073 352 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 HOXC5Q00444 222 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 PRDX1Q06830 199 aaKnown RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 C17orf67Q0P5P2 114 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 RGNQ15493 299 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 DUSP7Q16829 419 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 HSF5Q4G112 596 aaPredicted RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 ACSM3Q53FZ2 586 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 BLOC1S3Q6QNY0 202 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 TMEM135Q86UB9 458 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 ZNF439Q8NDP4 499 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 PLEKHO2Q8TD55 490 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 FUBP1Q96AE4 644 aaKnown RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 ZNF419Q96HQ0 510 aaPredicted RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 MAELQ96JY0 434 aaKnown RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 ZNF778Q96MU6 729 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 IP6K3Q96PC2 410 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 PRRT1Q99946 306 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 DPCDQ9BVM2 203 aaPredicted RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 BARHL1Q9BZE3 327 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 C1orf198Q9H425 327 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 NLKQ9UBE8 527 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 PCYT1BQ9Y5K3 369 aaPredicted RBP6.72□□□□□ -1.33
UPF2-203ENST00000397053 TSPAN11A1L157 253 aa6.72□□□□□ -1.33
UPF2-203ENST00000397053 K7EQM0 130 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms