RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 IL20RBQ6UXL0 311 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 CREB3L4Q8TEY5 395 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 CLEC4CQ8WTT0 213 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 RANGRFQ9HD47 186 aaPredicted RBP10.94□□□□□ -0.66
VPS13A-205ENST00000376636 SLC7A7Q9UM01 511 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 DIDO1Q9BTC0 2240 aaKnown RBP10.94□□□□□ -0.66
VPS13A-205ENST00000376636 PARP4Q9UKK3 1724 aaKnown RBP10.94□□□□□ -0.66
VPS13A-205ENST00000376636 TCRBV7S3A2A0A539 114 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 GSRP00390 522 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 TRAPPC2P0DI81 140 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 TRAPPC2BP0DI82 140 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 SLC1A3P43003 542 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 CDK5R2Q13319 367 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 FRMD1Q8N878 549 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 TANKQ92844 425 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 C1orf74Q96LT6 269 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 EXOSC3Q9NQT5 275 aaKnown RBP10.94□□□□□ -0.66
VPS13A-205ENST00000376636 OR14J1Q9UGF5 321 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 PCDHAC2Q9Y5I4 1007 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 NCBP2LA6PVI3 153 aaKnown RBP10.94□□□□□ -0.66
VPS13A-205ENST00000376636 HEXAP06865 529 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 ITGAMP11215 1152 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 HNRNPA3P51991 378 aaKnown RBP10.94□□□□□ -0.66
VPS13A-205ENST00000376636 ACSM1Q08AH1 577 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 CLSTN3Q9BQT9 956 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 HERPUD2Q9BSE4 406 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 MEIS3P1A6NDR6 274 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 FAM163BP0C2L3 166 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 CSNK1A1P48729 337 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 HSF1Q00613 529 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 BEX5Q5H9J7 111 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 DHRS9Q9BPW9 319 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 CLCF1Q9UBD9 225 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 SLC2A6Q9UGQ3 507 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 ZNF587BE7ETH6 402 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 FPGSQ05932 587 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 SLC46A3Q7Z3Q1 461 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 CATSPERDQ86XM0 798 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 DNAJA3Q96EY1 480 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 TRIB1Q96RU8 372 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 SOX7Q9BT81 388 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 SEMA4GQ9NTN9 838 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 ETV7Q9Y603 341 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 STYXL1Q9Y6J8 313 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 IGHG1P01857 330 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 AMTP48728 403 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 MEF2AQ02078 507 aaPredicted RBP10.94□□□□□ -0.66
VPS13A-205ENST00000376636 Q6ZRG5 221 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 OBP2BQ9NPH6 170 aa10.94□□□□□ -0.66
VPS13A-205ENST00000376636 UGDHO60701 494 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 HOXA11P31270 313 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-205ENST00000376636 TECRLQ5HYJ1 363 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 PARP16Q8N5Y8 322 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 NOL4LQ96MY1 436 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-205ENST00000376636 DPH2Q9BQC3 489 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-205ENST00000376636 C1orf198Q9H425 327 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 RASD1Q9Y272 281 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 CD1DP15813 335 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 SIAH1Q8IUQ4 282 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 OR2T11Q8NH01 316 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 SCLYQ96I15 445 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 OLAHQ9NV23 265 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 LHX6Q9UPM6 363 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 PRAMEF11O60813 436 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 ELAVL3Q14576 367 aaKnown RBP10.93□□□□□ -0.66
VPS13A-205ENST00000376636 GRM7Q14831 915 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 ZNF322Q6U7Q0 402 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-205ENST00000376636 SAMD8Q96LT4 415 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 WDR92Q96MX6 357 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 LPAR4Q99677 370 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 TMEM175Q9BSA9 504 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 GNB4Q9HAV0 340 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 MCRIP1C9JLW8 97 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 RGS11O94810 467 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 FGF3P11487 239 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-205ENST00000376636 TMEM11P17152 192 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 ZNF684Q5T5D7 378 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 NKX6-2Q9C056 277 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-205ENST00000376636 PCDHGA1Q9Y5H4 931 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 PRRC2BQ5JSZ5 2229 aaKnown RBP10.93□□□□□ -0.66
VPS13A-205ENST00000376636 SULT2B1O00204 365 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 SUB1P53999 127 aaKnown RBP eCLIP10.93□□□□□ -0.66
VPS13A-205ENST00000376636 ERVFC1P60507 584 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 APH1AQ96BI3 265 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 TMEM19Q96HH6 336 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 SRRQ9GZT4 340 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 ZDHHC11Q9H8X9 412 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.93□□□□□ -0.667e-7■■■■■ 33.2
VPS13A-205ENST00000376636 FTSJ1Q9UET6 329 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 ZNF281Q9Y2X9 895 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 INSL6Q9Y581 213 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 A0A0B4J2A0 478 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 METTL15A6NJ78 407 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 ITGB8P26012 769 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 CXCR4P61073 352 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 SOWAHAQ2M3V2 549 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 ALKAL2Q6UX46 152 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 BPIFB2Q8N4F0 458 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 SLC24A4Q8NFF2 622 aa10.93□□□□□ -0.66
VPS13A-205ENST00000376636 SHPKQ9UHJ6 478 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms