RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CUL9Q8IWT3 2517 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CNOT1A5YKK6 2376 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 PRR23AA6NEV1 266 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 VSTM2BA6NLU5 285 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ENO4A6NNW6 628 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 FTCDNL1E5RQL4 147 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 H0YGG7 62 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 FAAHO00519 579 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 BCKDKO14874 412 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 TO15178 435 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 AKAP8O43823 692 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 DOK2O60496 412 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 FMO6PO60774 539 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CATP04040 527 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 ANXA2P07355 339 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 ASAH2BP0C7U1 165 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 HOXB6P17509 224 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 MAGP20916 626 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 IGFBP5P24593 272 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PPP2R1BP30154 601 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 AKT1P31749 480 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PTGS2P35354 604 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 FEN1P39748 380 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 GRK6P43250 576 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 DSTNP60981 165 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ARF3P61204 181 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 NCS1P62166 190 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ABATP80404 500 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CDC20Q12834 499 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 KIR2DS3Q14952 304 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 DECR1Q16698 335 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PCK2Q16822 640 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 KRTAP27-1Q3LI81 207 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 MANEAQ5SRI9 462 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ANXA8L1Q5VT79 327 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 FAM166AQ6J272 317 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 TMEM107Q6UX40 140 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 UNQ9370/PRO34162Q6UXP9 181 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ZNF620Q6ZNG0 422 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 Q6ZSN1 163 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 Q6ZSR6 202 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 TMPRSS11FQ6ZWK6 438 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 NUP54Q7Z3B4 507 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 HMGN2P46Q86SG4 172 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 IQCHQ86VS3 1027 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 MEX3DQ86XN8 651 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 TRAPPC5Q8IUR0 188 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ARMC8Q8IUR7 673 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 C9orf40Q8IXQ3 194 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CYP4Z2PQ8N1L4 340 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 DHRSXQ8N5I4 330 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PFN4Q8NHR9 129 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CXorf40AQ8TE69 158 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 GANCQ8TET4 914 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CDS1Q92903 461 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 RAB8BQ92930 207 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SLC35B4Q969S0 331 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ZNF501Q96CX3 271 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 LGALS12Q96DT0 336 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 OTUB1Q96FW1 271 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 ABHD8Q96I13 439 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PRRC1Q96M27 445 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 C12orf66Q96MD2 445 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 OR2M4Q96R27 311 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 STACQ99469 402 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 BDH2Q9BUT1 245 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PINK1Q9BXM7 581 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 MROQ9BYG7 248 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ANKRD19PQ9H560 264 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 EGLN3Q9H6Z9 239 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PPP1R3EQ9H7J1 279 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CNOT2Q9NZN8 540 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 EPHA6Q9UF33 1036 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 FBXL4Q9UKA2 621 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SIGLEC7Q9Y286 467 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ZNF443Q9Y2A4 671 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 KCNE2Q9Y6J6 123 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 V9GYQ6 96 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 RNF103-CHMP3A0A140T963 221 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 A0A1W2PQM1 296 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 LILRA5A6NI73 299 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 GLOD5A6NK44 160 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 NTN3O00634 580 aaPredicted RBP2.09□□□□□ -2.07
VPS54-202ENST00000354504 AP3D1O14617 1153 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 FADS1O60427 444 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 IGLV3-1P01715 115 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 APODP05090 189 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 BCHEP06276 602 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 CPMP14384 443 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 HOXB2P14652 356 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 PVRP15151 417 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 ATP6V1B1P15313 513 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 EGR1P18146 543 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 GADD45AP24522 165 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 CNR2P34972 360 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 DDOSTP39656 456 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 CAPZBP47756 277 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 CRISP1P54107 249 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 GFERP55789 205 aa2.09□□□□□ -2.07
VPS54-202ENST00000354504 NUP107P57740 925 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms