RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 SCO2O43819 266 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 SCO1O75880 301 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 OR5F1O95221 314 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 CFIP05156 583 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 SCG5P05408 212 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 ZGLP1P0C6A0 271 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 NME1P15531 152 aaKnown RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 WNT4P56705 351 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 LCN6P62502 163 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 ARHGAP40Q5TG30 622 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 PLET1Q6UQ28 207 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 CHAC2Q8WUX2 184 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 ATOH1Q92858 354 aaPredicted RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 TRIM63Q969Q1 353 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 PHF21AQ96BD5 680 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 PRSS27Q9BQR3 290 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 SPEF1Q9Y4P9 236 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 CDH10Q9Y6N8 788 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 ARRDC5A6NEK1 342 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 PRR23D1E9PI22 279 aaPredicted RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 SURF4O15260 269 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 BRINP1O60477 761 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 PRR23D2P0DMB1 279 aaPredicted RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 FOLR1P15328 257 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 SDHBP21912 280 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 UQCRC1P31930 480 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 RFX2P48378 723 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 QPRTQ15274 297 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 DECR1Q16698 335 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 BTBD16Q32M84 506 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 FHL5Q5TD97 284 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 SYT9Q86SS6 491 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 SLC25A36Q96CQ1 311 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 ZNF764Q96H86 408 aaPredicted RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 DUSP22Q9NRW4 184 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 CUTCQ9NTM9 273 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 PLCL2Q9UPR0 1127 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 PRELID1Q9Y255 219 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 MRPS17Q9Y2R5 130 aaKnown RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 TP53BP1Q12888 1972 aaPredicted RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 FOSL2P15408 326 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 RPS27P42677 84 aaKnown RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 SLC1A3P43003 542 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 RORCP51449 518 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 NR0B1P51843 470 aaKnown RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 IL20RBQ6UXL0 311 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 TIGD4Q8IY51 512 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 UFD1Q92890 307 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 TCTN2Q96GX1 697 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 FRMD6Q96NE9 622 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 TSSK2Q96PF2 358 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 BARHL1Q9BZE3 327 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 C11orf54Q9H0W9 315 aaPredicted RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 NXF5Q9H1B4 397 aaKnown RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 KRCC1Q9NPI7 259 aaPredicted RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 TXNL4BQ9NX01 149 aaKnown RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 COLQQ9Y215 455 aaPredicted RBP12.8□□□□□ -0.36
TRIM4-201ENST00000349062 IER3IP1Q9Y5U9 82 aa12.8□□□□□ -0.36
TRIM4-201ENST00000349062 A0A1W2PQL4 384 aaPredicted RBP12.79□□□□□ -0.36
TRIM4-201ENST00000349062 FAM86C2PA6NEL3 165 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 OIP5O43482 229 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 CDC40O60508 579 aaKnown RBP eCLIP12.79□□□□□ -0.36
TRIM4-201ENST00000349062 PDGFBP01127 241 aaPredicted RBP12.79□□□□□ -0.36
TRIM4-201ENST00000349062 OPN1LWP04000 364 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 F13BP05160 661 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 NGFRP08138 427 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 LIMS3P0CW19 117 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 LIMS4P0CW20 117 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 ERVK-25P63136 954 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 CCDC190Q86UF4 302 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 SLC35F3Q8IY50 421 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 YIPF7Q8N8F6 280 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 C19orf18Q8NEA5 215 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 ORAI1Q96D31 301 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 NLKQ9UBE8 527 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 CBLCQ9ULV8 474 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 RIIAD1A6NNX1 92 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 C11orf98E9PRG8 122 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 ERVH48-1M5A8F1 160 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 SLC30A4O14863 429 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 BCAT2O15382 392 aaPredicted RBP12.79□□□□□ -0.36
TRIM4-201ENST00000349062 CTNSO60931 367 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 GLULP15104 373 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 FPR3P25089 353 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 STAT5AP42229 794 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 FABP5Q01469 135 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 GPR50Q13585 617 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 CEBPEQ15744 281 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 HLA-DQA1Q5Y7H0 255 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 LANCL3Q6ZV70 420 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 PROKR2Q8NFJ6 384 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 OR13C5Q8NGS8 318 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 PIGKQ92643 395 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 STMN3Q9NZ72 180 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 STUB1Q9UNE7 303 aa12.79□□□□□ -0.36
TRIM4-201ENST00000349062 A0A1W2PRG6 482 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 HCRTR2O43614 444 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 GDF9O60383 454 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 PLGP00747 810 aaPredicted RBP12.78□□□□□ -0.36
TRIM4-201ENST00000349062 TP53I3Q53FA7 332 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms