RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 LSM11P83369 360 aaKnown RBP eCLIP14.68□□□□□ -0.066e-9■■■■□ 22.3
HMGA1-202ENST00000347617 REEP5Q00765 189 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 GAS6Q14393 721 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 DMKNQ6E0U4 476 aaPredicted RBP14.68□□□□□ -0.06
HMGA1-202ENST00000347617 KANSL1Q7Z3B3 1105 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 PDZD9Q8IXQ8 264 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 MEIOBQ8N635 442 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 ZNF740Q8NDX6 193 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 OR11G2Q8NGC1 345 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 OR5D16Q8NGK9 328 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 TIMP4Q99727 224 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 TIMM29Q9BSF4 260 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 YIPF4Q9BSR8 244 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 LGR4Q9BXB1 951 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 DNTTIP1Q9H147 329 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 UBQLN3Q9H347 655 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 GLIPR2Q9H4G4 154 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 HRASLSQ9HDD0 168 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 SLC35C2Q9NQQ7 365 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 PIPOXQ9P0Z9 390 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 SLC17A4Q9Y2C5 497 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 CDH23Q9H251 3354 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 MPTX1A8MV57 137 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 ATP1B1P05026 303 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 SYPP08247 313 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 PSMA6P60900 246 aaKnown RBP14.68□□□□□ -0.06
HMGA1-202ENST00000347617 CCINQ13939 588 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 GK2Q14410 553 aaPredicted RBP14.68□□□□□ -0.06
HMGA1-202ENST00000347617 ZNF169Q14929 603 aaPredicted RBP14.68□□□□□ -0.06
HMGA1-202ENST00000347617 SLC25A35Q3KQZ1 300 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 PRPF38BQ5VTL8 546 aaKnown RBP14.68□□□□□ -0.06
HMGA1-202ENST00000347617 ZC3H14Q6PJT7 736 aaKnown RBP14.68□□□□□ -0.06
HMGA1-202ENST00000347617 RNF113BQ8IZP6 322 aaKnown RBP14.68□□□□□ -0.06
HMGA1-202ENST00000347617 TMEM99Q8N816 258 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 BEST4Q8NFU0 473 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 PCNPQ8WW12 178 aaKnown RBP14.68□□□□□ -0.06
HMGA1-202ENST00000347617 MS4A3Q96HJ5 214 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 F2RL3Q96RI0 385 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 BBS4Q96RK4 519 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 CACYBPQ9HB71 228 aaKnown RBP14.68□□□□□ -0.06
HMGA1-202ENST00000347617 KLHL1Q9NR64 748 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 CTPS2Q9NRF8 586 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 HAO2Q9NYQ3 351 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 KLHL9Q9P2J3 617 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 MMP17Q9ULZ9 603 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 CHST2Q9Y4C5 530 aa14.68□□□□□ -0.06
HMGA1-202ENST00000347617 F5P12259 2224 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 UNC119BA6NIH7 251 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 CPSF4LA6NMK7 179 aaKnown RBP14.67□□□□□ -0.06
HMGA1-202ENST00000347617 MAN2B1O00754 1011 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 DVL2O14641 736 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 PDCD5O14737 125 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 KRT33AO76009 404 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 HIST1H2ABP04908 130 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 ANKRD34CP0C6C1 535 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 ERGP11308 486 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 DLX5P56178 289 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 RGS8P57771 180 aaPredicted RBP14.67□□□□□ -0.06
HMGA1-202ENST00000347617 SEC61A1P61619 476 aaKnown RBP14.67□□□□□ -0.06
HMGA1-202ENST00000347617 PRR5P85299 388 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 MLLT1Q03111 559 aaPredicted RBP14.67□□□□□ -0.06
HMGA1-202ENST00000347617 FUT5Q11128 374 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 HLXQ14774 488 aaPredicted RBP14.67□□□□□ -0.06
HMGA1-202ENST00000347617 SHEQ5VZ18 495 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 ZNF626Q68DY1 528 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 HIST3H2AQ7L7L0 130 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 SZRD1Q7Z422 152 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 DCUN1D3Q8IWE4 304 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 SLC43A2Q8N370 569 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 STPG2Q8N412 459 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 HIST1H2ACQ93077 130 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 SLC41A3Q96GZ6 507 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 MRGPRX1Q96LB2 322 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 SAMD8Q96LT4 415 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 GSDMCQ9BYG8 508 aa14.67□□□□□ -0.06
HMGA1-202ENST00000347617 UBE2ZQ9H832 354 aaPredicted RBP14.67□□□□□ -0.06
HMGA1-202ENST00000347617 TEX10Q9NXF1 929 aaPredicted RBP14.67□□□□□ -0.06
HMGA1-202ENST00000347617 PCDHGA9Q9Y5G4 932 aaKnown RBP14.67□□□□□ -0.06
HMGA1-202ENST00000347617 TBC1D3DA0A087WVF3 549 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 TBC1D3IA0A087WXS9 549 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 TBC1D3EA0A087X179 549 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 TBC1D3KA0A087X1G2 549 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 TBC1D3FA6NER0 549 aaPredicted RBP14.66□□□□□ -0.06
HMGA1-202ENST00000347617 C10orf142B7Z368 130 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 TBC1D3LB9A6J9 549 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 D6RAR5 112 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 RCBTB2O95199 551 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 TBX6O95947 436 aaPredicted RBP14.66□□□□□ -0.06
HMGA1-202ENST00000347617 HRGP04196 525 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 TBC1D3HP0C7X1 549 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 MAT2AP31153 395 aaKnown RBP14.66□□□□□ -0.06
HMGA1-202ENST00000347617 MNDAP41218 407 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 RGS19P49795 217 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 NCBP2P52298 156 aaKnown RBP eCLIP14.66□□□□□ -0.06
HMGA1-202ENST00000347617 S100A12P80511 92 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 UBXN2BQ14CS0 331 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 TBC1D3GQ6DHY5 549 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 TBC1D3CQ6IPX1 549 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 PLBD1Q6P4A8 553 aa14.66□□□□□ -0.06
HMGA1-202ENST00000347617 MCATQ8IVS2 390 aaKnown RBP14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms