RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 C10orf90Q96M02 699 aa6□□□□□ -1.45
VPS35-201ENST00000299138 NOL4LQ96MY1 436 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 MKKSQ9NPJ1 570 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 FTSJ1Q9UET6 329 aa6□□□□□ -1.45
VPS35-201ENST00000299138 ELF5Q9UKW6 265 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 IGLV3-16A0A075B6K0 115 aa6□□□□□ -1.45
VPS35-201ENST00000299138 LOC102723971A0A1B0GUV8 181 aa6□□□□□ -1.45
VPS35-201ENST00000299138 IL33O95760 270 aa6□□□□□ -1.45
VPS35-201ENST00000299138 OPN1SWP03999 348 aa6□□□□□ -1.45
VPS35-201ENST00000299138 IFITM2Q01629 132 aa6□□□□□ -1.45
VPS35-201ENST00000299138 HNF4GQ14541 408 aa6□□□□□ -1.45
VPS35-201ENST00000299138 NKG7Q16617 165 aa6□□□□□ -1.45
VPS35-201ENST00000299138 ENTPD8Q5MY95 495 aa6□□□□□ -1.45
VPS35-201ENST00000299138 TRILQ7L0X0 811 aa6□□□□□ -1.45
VPS35-201ENST00000299138 CEACAM19Q7Z692 300 aa6□□□□□ -1.45
VPS35-201ENST00000299138 ZNF573Q86YE8 665 aa6□□□□□ -1.45
VPS35-201ENST00000299138 GRAMD2AQ8IUY3 354 aa6□□□□□ -1.45
VPS35-201ENST00000299138 FANK1Q8TC84 345 aa6□□□□□ -1.45
VPS35-201ENST00000299138 GPR152Q8TDT2 470 aa6□□□□□ -1.45
VPS35-201ENST00000299138 ADGRG7Q96K78 797 aa6□□□□□ -1.45
VPS35-201ENST00000299138 OR51E2Q9H255 320 aa6□□□□□ -1.45
VPS35-201ENST00000299138 OR51J1Q9H342 316 aa6□□□□□ -1.45
VPS35-201ENST00000299138 GPR83Q9NYM4 423 aa6□□□□□ -1.45
VPS35-201ENST00000299138 DNMT3BQ9UBC3 853 aaKnown RBP6□□□□□ -1.45
VPS35-201ENST00000299138 GOLT1BQ9Y3E0 138 aa6□□□□□ -1.45
VPS35-201ENST00000299138 A0A1W2PPV4 95 aa6□□□□□ -1.45
VPS35-201ENST00000299138 FKTNO75072 461 aa6□□□□□ -1.45
VPS35-201ENST00000299138 SNCGO76070 127 aa6□□□□□ -1.45
VPS35-201ENST00000299138 FABP1P07148 127 aa6□□□□□ -1.45
VPS35-201ENST00000299138 UBBP0CG47 229 aa6□□□□□ -1.45
VPS35-201ENST00000299138 UBCP0CG48 685 aaKnown RBP6□□□□□ -1.45
VPS35-201ENST00000299138 IDSP22304 550 aa6□□□□□ -1.45
VPS35-201ENST00000299138 PITPNBP48739 271 aa6□□□□□ -1.45
VPS35-201ENST00000299138 TSPAN31Q12999 210 aa6□□□□□ -1.45
VPS35-201ENST00000299138 MLC1Q15049 377 aa6□□□□□ -1.45
VPS35-201ENST00000299138 FAM26DQ5JW98 314 aa6□□□□□ -1.45
VPS35-201ENST00000299138 CTSL3PQ5NE16 218 aa6□□□□□ -1.45
VPS35-201ENST00000299138 VASNQ6EMK4 673 aa6□□□□□ -1.45
VPS35-201ENST00000299138 PSAPL1Q6NUJ1 521 aa6□□□□□ -1.45
VPS35-201ENST00000299138 AGTRAPQ6RW13 159 aa6□□□□□ -1.45
VPS35-201ENST00000299138 CEP68Q76N32 757 aa6□□□□□ -1.45
VPS35-201ENST00000299138 GPRIN1Q7Z2K8 1008 aa6□□□□□ -1.45
VPS35-201ENST00000299138 RNF180Q86T96 592 aa6□□□□□ -1.45
VPS35-201ENST00000299138 ACBD7Q8N6N7 88 aa6□□□□□ -1.45
VPS35-201ENST00000299138 HMGB4Q8WW32 186 aa6□□□□□ -1.45
VPS35-201ENST00000299138 NEURL3Q96EH8 262 aa6□□□□□ -1.45
VPS35-201ENST00000299138 WDR77Q9BQA1 342 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 SLC19A3Q9BZV2 496 aa6□□□□□ -1.45
VPS35-201ENST00000299138 TSPAN10Q9H1Z9 355 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 PRO1933Q9H354 126 aa6□□□□□ -1.45
VPS35-201ENST00000299138 ERVMER34-1Q9H9K5 563 aa6□□□□□ -1.45
VPS35-201ENST00000299138 PARD6AQ9NPB6 346 aa6□□□□□ -1.45
VPS35-201ENST00000299138 TIMM13Q9Y5L4 95 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 DSPPQ9NZW4 1301 aa6□□□□□ -1.45
VPS35-201ENST00000299138 GFYI3L273 518 aa6□□□□□ -1.45
VPS35-201ENST00000299138 TRAF3IP2O43734 574 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 AQP8O94778 261 aa6□□□□□ -1.45
VPS35-201ENST00000299138 PTHP01270 115 aa6□□□□□ -1.45
VPS35-201ENST00000299138 COL13A1Q5TAT6 717 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 NECAP1Q8NC96 275 aa6□□□□□ -1.45
VPS35-201ENST00000299138 OR10Z1Q8NGY1 313 aa6□□□□□ -1.45
VPS35-201ENST00000299138 CPNE4Q96A23 557 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 DPH2Q9BQC3 489 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 C11orf54Q9H0W9 315 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 SLCO5A1Q9H2Y9 848 aa6□□□□□ -1.45
VPS35-201ENST00000299138 FKRPQ9H9S5 495 aa6□□□□□ -1.45
VPS35-201ENST00000299138 ZBTB20Q9HC78 741 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 TNFRSF12AQ9NP84 129 aa6□□□□□ -1.45
VPS35-201ENST00000299138 KCTD3Q9Y597 815 aa6□□□□□ -1.45
VPS35-201ENST00000299138 HRH3Q9Y5N1 445 aa6□□□□□ -1.45
VPS35-201ENST00000299138 CACNG2Q9Y698 323 aa6□□□□□ -1.45
VPS35-201ENST00000299138 OR5H15A6NDH6 313 aa6□□□□□ -1.45
VPS35-201ENST00000299138 OR5H14A6NHG9 310 aa6□□□□□ -1.45
VPS35-201ENST00000299138 OR5H1A6NKK0 313 aa6□□□□□ -1.45
VPS35-201ENST00000299138 ARVCFO00192 962 aa6□□□□□ -1.45
VPS35-201ENST00000299138 CTDSP2O14595 271 aa6□□□□□ -1.45
VPS35-201ENST00000299138 ENPP3O14638 875 aa6□□□□□ -1.45
VPS35-201ENST00000299138 GRM6O15303 877 aa6□□□□□ -1.45
VPS35-201ENST00000299138 IL5P05113 134 aa6□□□□□ -1.45
VPS35-201ENST00000299138 CSKP41240 450 aa6□□□□□ -1.45
VPS35-201ENST00000299138 SULT1A2P50226 295 aa6□□□□□ -1.45
VPS35-201ENST00000299138 KCNJ10P78508 379 aa6□□□□□ -1.45
VPS35-201ENST00000299138 DSC1Q08554 894 aa6□□□□□ -1.45
VPS35-201ENST00000299138 MPPED2Q15777 294 aa6□□□□□ -1.45
VPS35-201ENST00000299138 HAGHQ16775 308 aa6□□□□□ -1.45
VPS35-201ENST00000299138 ZNF628Q5EBL2 1059 aa6□□□□□ -1.45
VPS35-201ENST00000299138 LAIR2Q6ISS4 152 aa6□□□□□ -1.45
VPS35-201ENST00000299138 FAM151BQ6UXP7 276 aa6□□□□□ -1.45
VPS35-201ENST00000299138 UNQ6126/PRO20091Q6UXV3 157 aa6□□□□□ -1.45
VPS35-201ENST00000299138 WDR88Q6ZMY6 472 aa6□□□□□ -1.45
VPS35-201ENST00000299138 TMPRSS12Q86WS5 348 aa6□□□□□ -1.45
VPS35-201ENST00000299138 SYS1Q8N2H4 156 aa6□□□□□ -1.45
VPS35-201ENST00000299138 MBD3L1Q8WWY6 194 aa6□□□□□ -1.45
VPS35-201ENST00000299138 HERVK_113Q902F9 699 aa6□□□□□ -1.45
VPS35-201ENST00000299138 ZNF582Q96NG8 517 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 SPNS1Q9H2V7 528 aa6□□□□□ -1.45
VPS35-201ENST00000299138 TESQ9UGI8 421 aaKnown RBP6□□□□□ -1.45
VPS35-201ENST00000299138 BRWD3Q6RI45 1802 aa6□□□□□ -1.45
VPS35-201ENST00000299138 OR2AG2A6NM03 316 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 C1GALT1C1LP0DN25 315 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms