RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 S100A7P31151 101 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 CSKP41240 450 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 LILRA4P59901 499 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 AQP6Q13520 282 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 MAVSQ7Z434 540 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 DCXRQ7Z4W1 244 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 SLC38A6Q8IZM9 456 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 UBAC2Q8NBM4 344 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 SLC41A2Q96JW4 573 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 DPH1Q9BZG8 443 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 SLC7A11Q9UPY5 501 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 NPIPA5E9PKD4 350 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 CST4P01036 141 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 CBLP22681 906 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 MAXP61244 160 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF792Q3KQV3 632 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 RAET1GQ6H3X3 334 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 NTNG2Q96CW9 530 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TAF9BQ9HBM6 251 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 A4GALTQ9NPC4 353 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 STEAP1Q9UHE8 339 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF223Q9UK11 482 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 NPIPA1Q9UND3 350 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 AKAP12Q02952 1782 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 AFDNP55196 1824 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 A0A0G2JN53 185 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PLGP00747 810 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PFKLP17858 780 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 RAB6AP20340 208 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PSMB6P28072 239 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 SFTPDP35247 375 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ARHGAP19Q14CB8 494 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 SHEQ5VZ18 495 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ADGRE4PQ86SQ3 457 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 OR8D4Q8NGM9 314 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 OR5M9Q8NGP3 310 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF516Q92618 1163 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 MR1Q95460 341 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM19Q96HH6 336 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 LMF2Q9BU23 707 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 VAMP8Q9BV40 100 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF385DQ9H6B1 395 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 EVA1BQ9NVM1 165 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TESQ9UGI8 421 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 SH3BGRL2Q9UJC5 107 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 HHLA2Q9UM44 414 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 CXorf65A6NEN9 183 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 OR1F1O43749 312 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ANGPTL7O43827 346 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ATP1B2P14415 290 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ADRA2CP18825 462 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 CSNK1EP49674 416 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 AMZ1Q400G9 498 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 OR2T2Q6IF00 324 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 GDPD4Q6W3E5 623 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 FAM58AQ8N1B3 248 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 SMPDL3BQ92485 455 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 GPR61Q9BZJ8 451 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 UNCXA6NJT0 531 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SLC9B1P1A6NJY1 282 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF195O14628 629 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 NDUFS4O43181 175 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 CSO75390 466 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 OR2B8PP59922 312 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 UBE2IP63279 158 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM107Q6UX40 140 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 CLEC20AQ6ZU45 233 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SH2D5Q6ZV89 423 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 CPOQ8IVL8 374 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 KIAA0319LQ8IZA0 1049 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 FRZBQ92765 325 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PINX1Q96BK5 328 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SMIM12Q96EX1 92 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 CTDSP1Q9GZU7 261 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 BPIFA1Q9NP55 256 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PIM2Q9P1W9 311 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 KDM4FA0A1W2PPD8 638 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 CST3P01034 146 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ITGA5P08648 1049 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SPCS3P61009 180 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 NHLH2Q02577 135 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 RAB35Q15286 201 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 FAM98CQ17RN3 349 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 AFMIDQ63HM1 303 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SLC29A4Q7RTT9 530 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF619Q8N2I2 560 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 MOGAT1Q96PD6 335 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SPANXA1Q9NS26 97 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 RYDENQ9NUL5 291 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 NCDNQ9UBB6 729 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 TBC1D3EA0A087X179 549 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 MDFIC2A0A1B0GVS7 189 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF729A6NN14 1252 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 LGALS8O00214 317 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PFKMP08237 780 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 OR5AC1P0C628 307 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SLC2A1P11166 492 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SOX10P56693 466 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ZP2Q05996 745 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PPA1Q15181 289 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms