RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ZNF84P51523 738 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 FAM27E3Q08E93 113 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 SLC39A14Q15043 492 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 IZUMO4Q1ZYL8 232 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 IFI44LQ53G44 452 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 RAB6CQ53S08 254 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.81□□□□□ -1.8
LINC00540-201ENST00000611481 ATAD3BQ5T9A4 648 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 TEX38Q6PEX7 206 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 ANGPTL8Q6UXH0 198 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 ZYG11AQ6WRX3 759 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 LANCL3Q6ZV70 420 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 ZNF550Q7Z398 422 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 CTAGE6Q86UF2 777 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 SLC22A16Q86VW1 577 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 AMIGO1Q86WK6 493 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 LACC1Q8IV20 430 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 FAM219AQ8IW50 185 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 SERPINA12Q8IW75 414 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 CTAGE4Q8IX94 777 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 DDIASQ8IXT1 998 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 ZNF595Q8IYB9 648 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 UMODL1-AS1Q8N2C9 162 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 RASGEF1CQ8N431 466 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 TMEM251Q8N6I4 163 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 ZNF397Q8NF99 534 aaPredicted RBP3.81□□□□□ -1.8
LINC00540-201ENST00000611481 OR52M1Q8NGK5 317 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 M1APQ8TC57 530 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 UBLCP1Q8WVY7 318 aaPredicted RBP3.81□□□□□ -1.8
LINC00540-201ENST00000611481 NSMAFQ92636 917 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 ST6GALNAC6Q969X2 333 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 RRNAD1Q96FB5 475 aaKnown RBP3.81□□□□□ -1.8
LINC00540-201ENST00000611481 RBM41Q96IZ5 413 aaKnown RBP3.81□□□□□ -1.8
LINC00540-201ENST00000611481 MS4A10Q96PG2 267 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 FAM110AQ9BQ89 295 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 TPPP3Q9BW30 176 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 TTTY12Q9BZ98 90 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 RAB6CQ9H0N0 254 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 RAB17Q9H0T7 212 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 SRD5A3Q9H8P0 318 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 TRIM45Q9H8W5 580 aaPredicted RBP3.81□□□□□ -1.8
LINC00540-201ENST00000611481 CHMP1AQ9HD42 196 aaPredicted RBP3.81□□□□□ -1.8
LINC00540-201ENST00000611481 EQTNQ9NQ60 294 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 DEPPQ9NTK1 212 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 C14orf105Q9NVL8 296 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 PKD2L2Q9NZM6 624 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 STOX2Q9P2F5 926 aaPredicted RBP3.81□□□□□ -1.8
LINC00540-201ENST00000611481 IKZF3Q9UKT9 509 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 PPIL1Q9Y3C6 166 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 U3KQV3 271 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 COL7A1Q02388 2944 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 TRGV5A0A0B4J1U4 118 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 A0A0G2JMM0 328 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 C1orf232A0A0U1RR37 186 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 A0A1W2PPB8 328 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 A0A1W2PRS3 328 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 CCT8L1PA6NM43 557 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 KIR3DP1A8MWS1 328 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 F8WDY8 70 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 G3V3Y1 287 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 PDXKO00764 312 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 PRYO14603 147 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 SCAMP2O15127 329 aaKnown RBP3.8□□□□□ -1.8
LINC00540-201ENST00000611481 MED7O43513 233 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 CYTIPO60759 359 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 G6PDP11413 515 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 TCF4P15884 667 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 CASP1P29466 404 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 MAXP61244 160 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 SLC10A7Q0GE19 358 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 PDZK1IP1Q13113 114 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 TSTA3Q13630 321 aaPredicted RBP3.8□□□□□ -1.8
LINC00540-201ENST00000611481 PDE7AQ13946 482 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 GGTLC2Q14390 218 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 MAPK11Q15759 364 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 ZKSCAN8Q15776 578 aaPredicted RBP3.8□□□□□ -1.8
LINC00540-201ENST00000611481 FAM189A2Q15884 450 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 EXT1Q16394 746 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 IQCCQ4KMZ1 466 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 PRAMEF8Q5VWM4 474 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 PRMT9Q6P2P2 845 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 LCTLQ6UWM7 567 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 QSOX2Q6ZRP7 698 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 SH2D5Q6ZV89 423 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 HAPLN4Q86UW8 402 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 SLC26A11Q86WA9 606 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 CADM3Q8N126 398 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 CYP4Z2PQ8N1L4 340 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 PYROXD2Q8N2H3 581 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 PGBD5Q8N414 524 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 KIF2BQ8N4N8 673 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 ZNF525Q8N782 197 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 OR2M7Q8NG81 312 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 HUS1BQ8NHY5 278 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 BBS10Q8TAM1 723 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 EME1Q96AY2 570 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 ANKRD9Q96BM1 317 aaPredicted RBP3.8□□□□□ -1.8
LINC00540-201ENST00000611481 FAF2Q96CS3 445 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 NTNG2Q96CW9 530 aa3.8□□□□□ -1.8
LINC00540-201ENST00000611481 CFAP36Q96G28 342 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms