RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 RBM34P42696 430 aaKnown RBP13.27□□□□□ -0.29
VRK3-217ENST00000599538 PSMD4P55036 377 aaKnown RBP13.27□□□□□ -0.29
VRK3-217ENST00000599538 CRMP1Q14194 572 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 PRPF38BQ5VTL8 546 aaKnown RBP13.27□□□□□ -0.29
VRK3-217ENST00000599538 CMIPQ8IY22 773 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 TMEM99Q8N816 258 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 SYT14Q8NB59 555 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 B4GALNT2Q8NHY0 566 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 PHOSPHO1Q8TCT1 267 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 TIMP4Q99727 224 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 OR51V1Q9H2C8 321 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 ISG20L2Q9H9L3 353 aaKnown RBP13.27□□□□□ -0.29
VRK3-217ENST00000599538 TXNL4BQ9NX01 149 aaKnown RBP13.27□□□□□ -0.29
VRK3-217ENST00000599538 RPS6KB2Q9UBS0 482 aa13.27□□□□□ -0.29
VRK3-217ENST00000599538 NUP210LQ5VU65 1888 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 IGKV1D-42A0A075B6H8 117 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 A0A087WUJ7 227 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 IGHV3-20A0A0C4DH32 117 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 EFCAB7A8K855 629 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 SIGLEC6O43699 453 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 IL33O95760 270 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 CLEC2LP0C7M8 214 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 RORAP35398 523 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 CCR4P51679 360 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 MXD1Q05195 221 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 INSL4Q14641 139 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 EBPQ15125 230 aaKnown RBP13.26□□□□□ -0.29
VRK3-217ENST00000599538 ELAVL1Q15717 326 aaKnown RBP13.26□□□□□ -0.29
VRK3-217ENST00000599538 C22orf42Q6IC83 251 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 COX15Q7KZN9 410 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 MEPCEQ7L2J0 689 aaKnown RBP13.26□□□□□ -0.29
VRK3-217ENST00000599538 FAM71CQ8NEG0 241 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 SAP25Q8TEE9 199 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 CHPT1Q8WUD6 406 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 SPRYD4Q8WW59 207 aaPredicted RBP13.26□□□□□ -0.29
VRK3-217ENST00000599538 LCORQ96JN0 433 aaPredicted RBP13.26□□□□□ -0.29
VRK3-217ENST00000599538 TPK1Q9H3S4 243 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 EVA1AQ9H8M9 152 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 UBQLN4Q9NRR5 601 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 SNTG1Q9NSN8 517 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 TNFRSF10DQ9UBN6 386 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 PILRBQ9UKJ0 227 aa13.26□□□□□ -0.29
VRK3-217ENST00000599538 TNRC6BQ9UPQ9 1833 aaKnown RBP13.25□□□□□ -0.29
VRK3-217ENST00000599538 A0A1B0GTQ1 180 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 IRGMA1A4Y4 181 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 SMIM30A4D0T7 59 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 CCDC182A6NF36 153 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 MCIDASD6RGH6 385 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 ZNF670-ZNF695F2Z2N8 137 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 IMPA2O14732 288 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 ICOSLGO75144 302 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 ZNF12P17014 697 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 NR0B1P51843 470 aaKnown RBP13.25□□□□□ -0.29
VRK3-217ENST00000599538 CCL7P80098 99 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 SKP2Q13309 424 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 BIKQ13323 160 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 TPBGQ13641 420 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 HLA-BQ31612 363 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 TMEM71Q6P5X7 295 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 OR5M3Q8NGP4 307 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 PIGKQ92643 395 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 SLC35B4Q969S0 331 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 FN3KQ9H479 309 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 SSR3Q9UNL2 185 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 CFL2Q9Y281 166 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 ADAM18Q9Y3Q7 739 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 C2orf92A0A1B0GVN3 265 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 FRG2CA6NGY1 282 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 C12orf71A8MTZ7 269 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 PRR23D1E9PI22 279 aaPredicted RBP13.25□□□□□ -0.29
VRK3-217ENST00000599538 WISP1O95388 367 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 MRPL3P09001 348 aaKnown RBP13.25□□□□□ -0.29
VRK3-217ENST00000599538 MSL3P1P0C860 447 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 PRR23D2P0DMB1 279 aaPredicted RBP13.25□□□□□ -0.29
VRK3-217ENST00000599538 TDGF1P13385 188 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 HPGDP15428 266 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 SLC16A1P53985 500 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 FABP5Q01469 135 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 RGS21Q2M5E4 152 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 VASNQ6EMK4 673 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 RPL13AP3Q6NVV1 102 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 KMT5CQ86Y97 462 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 C1GALT1C1Q96EU7 318 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 ART5Q96L15 291 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 TEAD3Q99594 435 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 POLE4Q9NR33 117 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 ICAM5Q9UMF0 924 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 SLC35A3Q9Y2D2 325 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 A3GALT2U3KPV4 340 aa13.25□□□□□ -0.29
VRK3-217ENST00000599538 ALPK2Q86TB3 2170 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 FAM86C2PA6NEL3 165 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 TTC36A6NLP5 189 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 DVL2O14641 736 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 UBL4AP11441 157 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 PEPDP12955 493 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 CD40LGP29965 261 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 COPZ1P61923 177 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 TMEM44Q2T9K0 475 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 PLK5Q496M5 336 aa13.24□□□□□ -0.29
VRK3-217ENST00000599538 GDPGP1Q6ZNW5 385 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms