RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 GMPPAQ96IJ6 420 aaPredicted RBP14.44□□□□□ -0.1
TRIM28-213ENST00000598355 ANKRD27Q96NW4 1050 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 CGREF1Q99674 301 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 RSPO3Q9BXY4 272 aaPredicted RBP14.44□□□□□ -0.1
TRIM28-213ENST00000598355 SAR1AQ9NR31 198 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 NDUFAF1Q9Y375 327 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 TMEM247A6NEH6 219 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 FXYD1O00168 92 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 FBP2O00757 339 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 ANGPT2O15123 496 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 OPN1LWP04000 364 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 ADSLP30566 484 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-213ENST00000598355 ACAA2P42765 397 aaKnown RBP14.43□□□□□ -0.1
TRIM28-213ENST00000598355 RAC3P60763 192 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 MERTKQ12866 999 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 TMEM176BQ3YBM2 270 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-213ENST00000598355 SYT14P1Q58G82 188 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 GCNT6Q5T4J0 391 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 BTLAQ7Z6A9 289 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 OSTF1Q92882 214 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 SPATA9Q9BWV2 254 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 GP6Q9HCN6 339 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 CTPS2Q9NRF8 586 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 GLRX2Q9NS18 164 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 RLIMQ9NVW2 624 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 GALNT8Q9NY28 637 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 CHRNA9Q9UGM1 479 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 SPG11Q96JI7 2443 aa14.43□□□□□ -0.1
TRIM28-213ENST00000598355 FAM221AA4D161 298 aa14.42□□□□□ -0.1
TRIM28-213ENST00000598355 CFAP73A6NFT4 308 aa14.42□□□□□ -0.1
TRIM28-213ENST00000598355 SYNGR4O95473 234 aa14.42□□□□□ -0.1
TRIM28-213ENST00000598355 PABPC4LP0CB38 370 aaKnown RBP14.42□□□□□ -0.1
TRIM28-213ENST00000598355 UQCRC1P31930 480 aa14.42□□□□□ -0.1
TRIM28-213ENST00000598355 CARD18P57730 90 aa14.42□□□□□ -0.1
TRIM28-213ENST00000598355 KLF10Q13118 480 aa14.42□□□□□ -0.1
TRIM28-213ENST00000598355 LARS2Q15031 903 aaKnown RBP14.42□□□□□ -0.1
TRIM28-213ENST00000598355 NET1Q7Z628 596 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-213ENST00000598355 PTOV1Q86YD1 416 aa14.42□□□□□ -0.1
TRIM28-213ENST00000598355 OR6K3Q8NGY3 331 aa14.42□□□□□ -0.1
TRIM28-213ENST00000598355 ZNF563Q8TA94 476 aa14.42□□□□□ -0.1
TRIM28-213ENST00000598355 RBM24Q9BX46 236 aaKnown RBP14.42□□□□□ -0.1
TRIM28-213ENST00000598355 MCCC2Q9HCC0 563 aa14.42□□□□□ -0.1
TRIM28-213ENST00000598355 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-213ENST00000598355 IFT52Q9Y366 437 aa14.42□□□□□ -0.1
TRIM28-213ENST00000598355 CREBBPQ92793 2442 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 A0A1W2PNR3 127 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 BBIP1A8MTZ0 92 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 EVPLLA8MZ36 301 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 SLC22A2O15244 555 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 FKBP2P26885 142 aaKnown RBP14.41□□□□□ -0.1
TRIM28-213ENST00000598355 AGTR1P30556 359 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 SLC7A1P30825 629 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 CCKARP32238 428 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 RYKP34925 604 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 SLC1A3P43003 542 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 HTR3AP46098 478 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 IDH2P48735 452 aaKnown RBP14.41□□□□□ -0.1
TRIM28-213ENST00000598355 CLK1P49759 484 aaKnown RBP14.41□□□□□ -0.1
TRIM28-213ENST00000598355 MAP2K6P52564 334 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 PCBP3P57721 371 aaKnown RBP14.41□□□□□ -0.1
TRIM28-213ENST00000598355 CDK6Q00534 326 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 SELPLGQ14242 412 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 TRMT5Q32P41 509 aaKnown RBP14.41□□□□□ -0.1
TRIM28-213ENST00000598355 REEP3Q6NUK4 255 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 ZNF474Q6S9Z5 364 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-213ENST00000598355 LUZP2Q86TE4 346 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 ADGRG3Q86Y34 549 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 KIF18BQ86Y91 864 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 CLIP4Q8N3C7 705 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 CNEP1R1Q8N9A8 125 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 NFKBIDQ8NI38 313 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 ADAM19Q9H013 955 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 KAT8Q9H7Z6 458 aaKnown RBP14.41□□□□□ -0.1
TRIM28-213ENST00000598355 TIGARQ9NQ88 270 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 SERINC1Q9NRX5 453 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 CRIM1Q9NZV1 1036 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 OSGIN1Q9UJX0 560 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 ING1Q9UK53 422 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-213ENST00000598355 SPIN1Q9Y657 262 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-213ENST00000598355 AKAP6Q13023 2319 aa14.41□□□□□ -0.1
TRIM28-213ENST00000598355 PRR14LQ5THK1 2151 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 SMAD9O15198 467 aaKnown RBP14.4□□□□□ -0.1
TRIM28-213ENST00000598355 DNPH1O43598 174 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 PRKAR1BP31321 381 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 DIO1P49895 249 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 SIRPAP78324 504 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 TLE4Q04727 773 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 RBBP4Q09028 425 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 NFYCQ13952 458 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 SCARB2Q14108 478 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 RNPS1Q15287 305 aaKnown RBP14.4□□□□□ -0.1
TRIM28-213ENST00000598355 ABLIM2Q6H8Q1 611 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 DHRS4L2Q6PKH6 230 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 TMPPEQ6ZT21 453 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 FCRLAQ7L513 359 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 COMTD1Q86VU5 262 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 SLC43A2Q8N370 569 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 HIPK4Q8NE63 616 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 FAM222BQ8WU58 562 aa14.4□□□□□ -0.1
TRIM28-213ENST00000598355 ABHD3Q8WU67 409 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms