RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 DACH2Q96NX9 599 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 CCDC106Q9BWC9 280 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 RAD21L1Q9H4I0 556 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 MTHFD2LQ9H903 347 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-205ENST00000595028 THUMPD1Q9NXG2 353 aaKnown RBP13.49□□□□□ -0.25
TRIM28-205ENST00000595028 ELOVL5Q9NYP7 299 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 CALML5Q9NZT1 146 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 CCDC167Q9P0B6 97 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 PCDHB14Q9Y5E9 798 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 VPS13CQ709C8 3753 aa13.49□□□□□ -0.25
TRIM28-205ENST00000595028 FREM1Q5H8C1 2179 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 A0A1W2PNR3 127 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 GOSR1O95249 250 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 TFPTP0C1Z6 253 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 BMP2P12643 396 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 POU2F1P14859 743 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 IL7RP16871 459 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 FADDQ13158 208 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 RNPS1Q15287 305 aaKnown RBP13.48□□□□□ -0.25
TRIM28-205ENST00000595028 SYT14P1Q58G82 188 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 RPS26P11Q5JNZ5 115 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-205ENST00000595028 MRPL2Q5T653 305 aaKnown RBP13.48□□□□□ -0.25
TRIM28-205ENST00000595028 ZNF836Q6ZNA1 936 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 FCRLAQ7L513 359 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 GRINAQ7Z429 371 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 MSRB3Q8IXL7 192 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 PEX5LQ8IYB4 626 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 ZNF610Q8N9Z0 462 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 SLC25A43Q8WUT9 341 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-205ENST00000595028 SLC38A5Q8WUX1 472 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 NRGNQ92686 78 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 THOC1Q96FV9 657 aaKnown RBP13.48□□□□□ -0.25
TRIM28-205ENST00000595028 TMEM19Q96HH6 336 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 OR5B2Q96R09 309 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 SIKE1Q9BRV8 207 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 SLC39A3Q9BRY0 314 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 SLC52A3Q9NQ40 469 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 SERINC1Q9NRX5 453 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 ZNF446Q9NWS9 450 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 SLC25A37Q9NYZ2 338 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 KLHL13Q9P2N7 655 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 CHRNA9Q9UGM1 479 aa13.48□□□□□ -0.25
TRIM28-205ENST00000595028 SPIN1Q9Y657 262 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-205ENST00000595028 PRRC2AP48634 2157 aaKnown RBP13.48□□□□□ -0.25
TRIM28-205ENST00000595028 TMEM247A6NEH6 219 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 CLIC1O00299 241 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 FAAHO00519 579 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 AP3D1O14617 1153 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 NUDT7P0C024 238 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 UQCRBP14927 111 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 UGT2B10P36537 528 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 APOBEC1P41238 236 aaKnown RBP13.47□□□□□ -0.25
TRIM28-205ENST00000595028 KCNJ5P48544 419 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 RAC3P60763 192 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 RGNQ15493 299 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 LIN52Q52LA3 116 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 AGKQ53H12 422 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 PAGE3Q5JUK9 113 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 GTF2IRD2BQ6EKJ0 949 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 GTF2IRD2Q86UP8 949 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 OR52P1PQ8NH57 321 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 RABEP2Q9H5N1 569 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 ZNF385DQ9H6B1 395 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 GP6Q9HCN6 339 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 NPHS2Q9NP85 383 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 CTPS2Q9NRF8 586 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 PLSCR4Q9NRQ2 329 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 NDRG3Q9UGV2 375 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 DCTN4Q9UJW0 460 aa13.47□□□□□ -0.25
TRIM28-205ENST00000595028 FLNAP21333 2647 aaKnown RBP13.47□□□□□ -0.25
TRIM28-205ENST00000595028 TRBV5-3A0A0A0MS03 114 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 IGHV3-15A0A0B4J1V0 119 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 CDHR4A6H8M9 788 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 CFAP73A6NFT4 308 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 SMAD9O15198 467 aaKnown RBP13.46□□□□□ -0.25
TRIM28-205ENST00000595028 ENPP1P22413 925 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 DNAJA1P31689 397 aaKnown RBP13.46□□□□□ -0.25
TRIM28-205ENST00000595028 HTR3AP46098 478 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 IDH2P48735 452 aaKnown RBP13.46□□□□□ -0.25
TRIM28-205ENST00000595028 EPS8Q12929 822 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 EXOC3L2Q2M3D2 409 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 TMEM201Q5SNT2 666 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 RNF220Q5VTB9 566 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 PRAMEF8Q5VWM4 474 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 PRAMEF7Q5VXH5 474 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 TMPPEQ6ZT21 453 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 VRK2Q86Y07 508 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 CDC20BQ86Y33 519 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 ZNF440Q8IYI8 595 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 SLC43A2Q8N370 569 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 NANOS1Q8WY41 292 aaKnown RBP13.46□□□□□ -0.25
TRIM28-205ENST00000595028 C12orf49Q9H741 205 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 A4GALTQ9NPC4 353 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 KLHL28Q9NXS3 571 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 VAPAQ9P0L0 249 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 SLAMF8Q9P0V8 285 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 TRIM33Q9UPN9 1127 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 ZNF443Q9Y2A4 671 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-205ENST00000595028 GMEB1Q9Y692 573 aa13.46□□□□□ -0.25
TRIM28-205ENST00000595028 A0A0G2JND7 137 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms