RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 SGCZQ96LD1 299 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 IMMP1LQ96LU5 166 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 MUS81Q96NY9 551 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 PITX2Q99697 317 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 TMEM43Q9BTV4 400 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 TAPBPLQ9BX59 468 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 GRIP2Q9C0E4 1043 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 LHPPQ9H008 270 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 CDCP1Q9H5V8 836 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 ZNF696Q9H7X3 374 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 AKIRIN1Q9H9L7 192 aaPredicted RBP5.66□□□□□ -1.5
LIG3-206ENST00000586058 LIN28AQ9H9Z2 209 aaKnown RBP5.66□□□□□ -1.5
LIG3-206ENST00000586058 TIMMDC1Q9NPL8 285 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 MAN2C1Q9NTJ4 1040 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 SACM1LQ9NTJ5 587 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 CNIH4Q9P003 139 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 H2AFY2Q9P0M6 372 aaPredicted RBP5.66□□□□□ -1.5
LIG3-206ENST00000586058 KCNE5Q9UJ90 142 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 ZNF223Q9UK11 482 aaPredicted RBP5.66□□□□□ -1.5
LIG3-206ENST00000586058 CDH10Q9Y6N8 788 aa5.66□□□□□ -1.5
LIG3-206ENST00000586058 A0A087WUJ7 227 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 A0A087WZY1 265 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 LOC101059948A0A1B0GTJ6 334 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 PMS2P1A4D2B8 440 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 GJE1A6NN92 205 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 RIIAD1A6NNX1 92 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 ZAR1LA6NP61 321 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 ZNF891A8MT65 544 aaPredicted RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 SLC1A7O00341 560 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 GNB5O14775 395 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 OR2T1O43869 369 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 PRKNO60260 465 aaPredicted RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 PIP5K1CO60331 668 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 FADS1O60427 444 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 SNX4O95219 450 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 OR6A2O95222 327 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 NADKO95544 446 aaPredicted RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 CLIC3O95833 236 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 MT-ATP6P00846 226 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 IGF2P01344 180 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 HMGN1P05114 100 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 CCDC159P0C7I6 412 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 ATP6V1B1P15313 513 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 ZNF3P17036 446 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 CHMP24386 653 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 FKBP2P26885 142 aaKnown RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 TACR3P29371 465 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 RPL4P36578 427 aaKnown RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 APOBEC1P41238 236 aaKnown RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 EIF1P41567 113 aaKnown RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 ACAA2P42765 397 aaKnown RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 CTBP2P56545 445 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 MLF1P58340 268 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 PRPS1P60891 318 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 CXCR4P61073 352 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 IL10RAQ13651 578 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 PTGES3Q15185 160 aaKnown RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 QPRTQ15274 297 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 TOMM20Q15388 145 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 SEC23BQ15437 767 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 NDUFAF6Q330K2 333 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 DCAF10Q5QP82 559 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 PRAMEF20Q5VT98 475 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 C3orf33Q6P1S2 294 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 ARHGAP11AQ6P4F7 1023 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 POMZP3Q6PJE2 187 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 SMARCD3Q6STE5 483 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 UGT2A3Q6UWM9 527 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 ZNF620Q6ZNG0 422 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 USP51Q70EK9 711 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 MAMDC2Q7Z304 686 aaPredicted RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 TSEN54Q7Z6J9 526 aaKnown RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 SIRT6Q8N6T7 355 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 FAM98AQ8NCA5 519 aaKnown RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 ZNF540Q8NDQ6 660 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 ZNF248Q8NDW4 579 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 OR10G3Q8NGC4 313 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 OR8J1Q8NGP2 316 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 OR1J4Q8NGS1 313 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 SLC25A43Q8WUT9 341 aaPredicted RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 TRUB1Q8WWH5 349 aaKnown RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 IPCEF1Q8WWN9 437 aaPredicted RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 HGDQ93099 445 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 RFKQ969G6 155 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 MYDGFQ969H8 173 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 ZBTB8AQ96BR9 441 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 C3orf49Q96BT1 292 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 ARSGQ96EG1 525 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 JSRP1Q96MG2 331 aaPredicted RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 NODALQ96S42 347 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 BARD1Q99728 777 aaKnown RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 UTP23Q9BRU9 249 aaKnown RBP5.65□□□□□ -1.5
LIG3-206ENST00000586058 IFT27Q9BW83 186 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 ASPNQ9BXN1 380 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 DPH1Q9BZG8 443 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 SPRY4Q9C004 299 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 CCDC90BQ9GZT6 254 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 SLC25A19Q9HC21 320 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 CPNE5Q9HCH3 593 aa5.65□□□□□ -1.5
LIG3-206ENST00000586058 NANSQ9NR45 359 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms