RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GPAT3Q53EU6 434 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 SFRP5Q5T4F7 317 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 C3orf33Q6P1S2 294 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 SPATA19Q7Z5L4 167 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 RNF130Q86XS8 419 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 ZNF619Q8N2I2 560 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 TMEM171Q8WVE6 324 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 ST8SIA1Q92185 356 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 S100PBPQ96BU1 408 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 PSD2Q9BQI7 771 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 ACER3Q9NUN7 267 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 THAP1Q9NVV9 213 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 BTNL2Q9UIR0 455 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 GPR45Q9Y5Y3 372 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 SMAD9O15198 467 aaKnown RBP18.17■□□□□ 0.5
SHMT1-209ENST00000582653 HDAC3O15379 428 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 SNNO75324 88 aaPredicted RBP18.17■□□□□ 0.5
SHMT1-209ENST00000582653 ADAP00813 363 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 GSNP06396 782 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 SYPL1Q16563 259 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 AP1ARQ63HQ0 302 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 ADAM5Q6NVV9 412 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 ZNF621Q6ZSS3 439 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 ANKFN1Q8N957 763 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 FAM71CQ8NEG0 241 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 TMEM234Q8WY98 164 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 HSD17B8Q92506 261 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 DNAJA3Q96EY1 480 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 OR52E6Q96RD3 313 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 PANX1Q96RD7 426 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 USB1Q9BQ65 265 aaKnown RBP18.17■□□□□ 0.5
SHMT1-209ENST00000582653 POLE3Q9NRF9 147 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 SERINC1Q9NRX5 453 aa18.17■□□□□ 0.5
SHMT1-209ENST00000582653 ZNF814B7Z6K7 855 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 HS3ST1O14792 307 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 ADAM11O75078 769 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 PGRP06401 933 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 GUSBP08236 651 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 EDNRAP25101 427 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 DIO1P49895 249 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 MAGOHP61326 146 aaKnown RBP18.16■□□□□ 0.5
SHMT1-209ENST00000582653 KCNJ10P78508 379 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 PLAURQ03405 335 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 RASGEF1BQ0VAM2 473 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 P2RY6Q15077 328 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.16■□□□□ 0.5
SHMT1-209ENST00000582653 ZNF563Q8TA94 476 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 PNPT1Q8TCS8 783 aaKnown RBP18.16■□□□□ 0.5
SHMT1-209ENST00000582653 ARL8AQ96BM9 186 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 ZNF300Q96RE9 604 aaPredicted RBP18.16■□□□□ 0.5
SHMT1-209ENST00000582653 TACO1Q9BSH4 297 aaKnown RBP18.16■□□□□ 0.5
SHMT1-209ENST00000582653 CXorf56Q9H5V9 222 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 BCO1Q9HAY6 547 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 NGBQ9NPG2 151 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 CTPS2Q9NRF8 586 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 KLHL9Q9P2J3 617 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 PRSS50Q9UI38 385 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 SLC35A3Q9Y2D2 325 aa18.16■□□□□ 0.5
SHMT1-209ENST00000582653 TRIM64A6NGJ6 449 aa18.15■□□□□ 0.5
SHMT1-209ENST00000582653 TRIM64BA6NI03 449 aa18.15■□□□□ 0.5
SHMT1-209ENST00000582653 TRPC5OSA6NMA1 111 aa18.15■□□□□ 0.5
SHMT1-209ENST00000582653 CYTIPO60759 359 aa18.15■□□□□ 0.5
SHMT1-209ENST00000582653 CNOT4O95628 575 aaKnown RBP18.15■□□□□ 0.5
SHMT1-209ENST00000582653 TFPIP10646 304 aa18.15■□□□□ 0.5
SHMT1-209ENST00000582653 ITGADQ13349 1161 aa18.15■□□□□ 0.5
SHMT1-209ENST00000582653 COX20Q5RI15 118 aa18.15■□□□□ 0.5
SHMT1-209ENST00000582653 NXNQ6DKJ4 435 aa18.15■□□□□ 0.5
SHMT1-209ENST00000582653 TMPPEQ6ZT21 453 aa18.15■□□□□ 0.5
SHMT1-209ENST00000582653 CNOT9Q92600 299 aaKnown RBP18.15■□□□□ 0.5
SHMT1-209ENST00000582653 AKAP1Q92667 903 aaKnown RBP eCLIP18.15■□□□□ 0.5
SHMT1-209ENST00000582653 ZNF75CPQ92670 426 aaPredicted RBP18.15■□□□□ 0.5
SHMT1-209ENST00000582653 CCDC106Q9BWC9 280 aa18.15■□□□□ 0.5
SHMT1-209ENST00000582653 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.15■□□□□ 0.5
SHMT1-209ENST00000582653 SULT2B1O00204 365 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 SMAD7O15105 426 aaKnown RBP18.14■□□□□ 0.49
SHMT1-209ENST00000582653 FESP07332 822 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 CHRM4P08173 479 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 CCNA2P20248 432 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 IL32P24001 234 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 HPCAP84074 193 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 TAB1Q15750 504 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 SLC9B1Q4ZJI4 515 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 SYT14P1Q58G82 188 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 NCMAPQ5T1S8 102 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 LILRB1Q8NHL6 650 aaPredicted RBP18.14■□□□□ 0.49
SHMT1-209ENST00000582653 RAB3IL1Q8TBN0 382 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 SLC38A1Q9H2H9 487 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 ESRP2Q9H6T0 727 aaKnown RBP18.14■□□□□ 0.49
SHMT1-209ENST00000582653 MANSC1Q9H8J5 431 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 SLC6A13Q9NSD5 602 aa18.14■□□□□ 0.49
SHMT1-209ENST00000582653 AP3D1O14617 1153 aa18.13■□□□□ 0.49
SHMT1-209ENST00000582653 APOBEC1P41238 236 aaKnown RBP18.13■□□□□ 0.49
SHMT1-209ENST00000582653 OR3A2P47893 321 aa18.13■□□□□ 0.49
SHMT1-209ENST00000582653 IDH2P48735 452 aaKnown RBP18.13■□□□□ 0.49
SHMT1-209ENST00000582653 ATG16L1Q676U5 607 aa18.13■□□□□ 0.49
SHMT1-209ENST00000582653 MAVSQ7Z434 540 aa18.13■□□□□ 0.49
SHMT1-209ENST00000582653 ATG4DQ86TL0 474 aaPredicted RBP18.13■□□□□ 0.49
SHMT1-209ENST00000582653 ADGRG3Q86Y34 549 aa18.13■□□□□ 0.49
SHMT1-209ENST00000582653 ARFGAP2Q8N6H7 521 aa18.13■□□□□ 0.49
SHMT1-209ENST00000582653 TRIML2Q8N7C3 387 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms