RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 SLURP1P55000 103 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 SPIBQ01892 262 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 MERTKQ12866 999 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 LARS2Q15031 903 aaKnown RBP9.37□□□□□ -0.91
SS18-221ENST00000582448 PRICKLE4Q2TBC4 344 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 MINDY4Q4G0A6 757 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 TRMT12Q53H54 448 aaKnown RBP9.37□□□□□ -0.91
SS18-221ENST00000582448 ZNF311Q5JNZ3 666 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 TTC23Q5W5X9 447 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 ZNF324BQ6AW86 544 aaPredicted RBP9.37□□□□□ -0.91
SS18-221ENST00000582448 FAAH2Q6GMR7 532 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 FAM111BQ6SJ93 734 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 COX15Q7KZN9 410 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 EPHX4Q8IUS5 362 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 PEX5LQ8IYB4 626 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 MARVELD2Q8N4S9 558 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 ATG16L2Q8NAA4 619 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 PIK3C3Q8NEB9 887 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 BRIX1Q8TDN6 353 aaKnown RBP9.37□□□□□ -0.91
SS18-221ENST00000582448 GPR151Q8TDV0 419 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 PHF10Q8WUB8 498 aaKnown RBP9.37□□□□□ -0.91
SS18-221ENST00000582448 NACC2Q96BF6 587 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 ART5Q96L15 291 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 ZNF300Q96RE9 604 aaPredicted RBP9.37□□□□□ -0.91
SS18-221ENST00000582448 STACQ99469 402 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 SERHL2Q9H4I8 314 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 MTHFD2LQ9H903 347 aaPredicted RBP9.37□□□□□ -0.91
SS18-221ENST00000582448 ZNF556Q9HAH1 456 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 CXorf21Q9HAI6 301 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 MKKSQ9NPJ1 570 aaPredicted RBP9.37□□□□□ -0.91
SS18-221ENST00000582448 POLE3Q9NRF9 147 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 DUSP22Q9NRW4 184 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 USE1Q9NZ43 259 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 MAT2BQ9NZL9 334 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 ENOPH1Q9UHY7 261 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 ABCG2Q9UNQ0 655 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 CFL2Q9Y281 166 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 ENPP4Q9Y6X5 453 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 U3KQV3 271 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 ANKRD17O75179 2603 aaKnown RBP9.37□□□□□ -0.91
SS18-221ENST00000582448 POLQO75417 2590 aa9.37□□□□□ -0.91
SS18-221ENST00000582448 HEATR5BQ9P2D3 2071 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 CNTRLQ7Z7A1 2325 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 NSG1A0A0A6YYJ2 146 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 TRAV17A0A0B4J275 112 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 A8MVJ9 347 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 STX11O75558 287 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 TNFAIP8O95379 198 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 HPP00738 406 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 ALPLP05186 524 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 MAOAP21397 527 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 MST1P26927 711 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 CAPGP40121 348 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 OR1E2P47887 323 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 MAN2A2P49641 1150 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 CASP6P55212 293 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 KRTAP10-9P60411 292 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 POU6F2P78424 691 aaPredicted RBP9.36□□□□□ -0.91
SS18-221ENST00000582448 IGLV3-21P80748 117 aaPredicted RBP9.36□□□□□ -0.91
SS18-221ENST00000582448 OCA2Q04671 838 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 RBPJQ06330 500 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 LSAMPQ13449 338 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 ZNF267Q14586 743 aaPredicted RBP9.36□□□□□ -0.91
SS18-221ENST00000582448 SYT16Q17RD7 645 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 ARHGAP11BQ3KRB8 267 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 EIPR1Q53HC9 387 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 NHSL2Q5HYW2 709 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 HEPHL1Q6MZM0 1159 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 MTFR2Q6P444 385 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 CARM1Q86X55 608 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 SLC16A11Q8NCK7 471 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 OR52R1Q8NGF1 315 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 TFAP2CQ92754 450 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 CDS1Q92903 461 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 GIMAP5Q96F15 307 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 OTUB1Q96FW1 271 aaPredicted RBP9.36□□□□□ -0.91
SS18-221ENST00000582448 SLC35A4Q96G79 324 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 C7orf34Q96L11 122 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 CNPPD1Q9BV87 410 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 PINK1Q9BXM7 581 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 ANKRD60Q9BZ19 345 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 GABARAPL1Q9H0R8 117 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 EVA1AQ9H8M9 152 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 WDR54Q9H977 334 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 Q9N2J8 555 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 NDUFAF4Q9P032 175 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 PDP1Q9P0J1 537 aaPredicted RBP9.36□□□□□ -0.91
SS18-221ENST00000582448 PRODH2Q9UF12 536 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 NXT1Q9UKK6 140 aaKnown RBP9.36□□□□□ -0.91
SS18-221ENST00000582448 WDR45Q9Y484 360 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 TESMINQ9Y4I5 508 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 F8P00451 2351 aa9.36□□□□□ -0.91
SS18-221ENST00000582448 CSMD2Q7Z408 3487 aa9.35□□□□□ -0.91
SS18-221ENST00000582448 C19orf84I3L1E1 186 aa9.35□□□□□ -0.91
SS18-221ENST00000582448 SYT5O00445 386 aa9.35□□□□□ -0.91
SS18-221ENST00000582448 UGT2B11O75310 529 aa9.35□□□□□ -0.91
SS18-221ENST00000582448 UGT2B17O75795 530 aa9.35□□□□□ -0.91
SS18-221ENST00000582448 WISP2O76076 250 aa9.35□□□□□ -0.91
SS18-221ENST00000582448 DIRAS1O95057 198 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms