RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CCNYL1Q8N7R7 359 aa9.7□□□□□ -0.86
VPS53-207ENST00000570510 CCDC63Q8NA47 563 aa9.7□□□□□ -0.86
VPS53-207ENST00000570510 OR6Y1Q8NGX8 325 aa9.7□□□□□ -0.86
VPS53-207ENST00000570510 CDC26Q8NHZ8 85 aa9.7□□□□□ -0.86
VPS53-207ENST00000570510 ZFP90Q8TF47 636 aa9.7□□□□□ -0.86
VPS53-207ENST00000570510 PSD2Q9BQI7 771 aa9.7□□□□□ -0.86
VPS53-207ENST00000570510 SUCNR1Q9BXA5 334 aa9.7□□□□□ -0.86
VPS53-207ENST00000570510 SAP130Q9H0E3 1048 aa9.7□□□□□ -0.86
VPS53-207ENST00000570510 MID1IP1Q9NPA3 183 aa9.7□□□□□ -0.86
VPS53-207ENST00000570510 EQTNQ9NQ60 294 aa9.7□□□□□ -0.86
VPS53-207ENST00000570510 TAS2R16Q9NYV7 291 aa9.7□□□□□ -0.86
VPS53-207ENST00000570510 C19orf53Q9UNZ5 99 aaPredicted RBP9.7□□□□□ -0.86
VPS53-207ENST00000570510 MOKQ9UQ07 419 aa9.7□□□□□ -0.86
VPS53-207ENST00000570510 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.7□□□□□ -0.86
VPS53-207ENST00000570510 TTC36A6NLP5 189 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 VSTM5A8MXK1 200 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 B9A039 149 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 ATP6V1G2-DDX39BF2Z307 99 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 PCDH7O60245 1069 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 CRCPO75575 148 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 OXSR1O95747 527 aaPredicted RBP9.69□□□□□ -0.86
VPS53-207ENST00000570510 BCL10O95999 233 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 TACSTD2P09758 323 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 EPHA1P21709 976 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 NTSP30990 170 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 ETV4P43268 484 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 RAC3P60763 192 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 FOXF1Q12946 379 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 PCLAFQ15004 111 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 SMU1Q2TAY7 513 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 FAHD2BQ6P2I3 314 aaPredicted RBP9.69□□□□□ -0.86
VPS53-207ENST00000570510 C4orf33Q8N1A6 199 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 NATD1Q8N6N6 113 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 OR4C3Q8NH37 302 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 FBXO27Q8NI29 283 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 POC1BQ8TC44 478 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 TCP10LQ8TDR4 215 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 PIK3R3Q92569 461 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 APH1AQ96BI3 265 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 FAHD2AQ96GK7 314 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 ZNF300Q96RE9 604 aaPredicted RBP9.69□□□□□ -0.86
VPS53-207ENST00000570510 ACPTQ9BZG2 426 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 LPAR2Q9HBW0 351 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 MIEF1Q9NQG6 463 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 FARSBQ9NSD9 589 aaKnown RBP9.69□□□□□ -0.86
VPS53-207ENST00000570510 HIF1ANQ9NWT6 349 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 PLCE1Q9P212 2302 aa9.69□□□□□ -0.86
VPS53-207ENST00000570510 FBXO9Q9UK97 447 aaPredicted RBP9.69□□□□□ -0.86
VPS53-207ENST00000570510 NOSIPQ9Y314 301 aaKnown RBP9.69□□□□□ -0.86
VPS53-207ENST00000570510 A0A1W2PNR3 127 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 GXYLT2A0PJZ3 443 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 SMIM23A6NLE4 172 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 ZNF724A8MTY0 619 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 UPK1AO00322 258 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 PPP6CO00743 305 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 AZIN1O14977 448 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 TBX19O60806 448 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 LILRA1O75019 489 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 WNT11O96014 354 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 BPGMP07738 259 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 GIFP27352 417 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 TIA1P31483 386 aaKnown RBP eCLIP9.68□□□□□ -0.86
VPS53-207ENST00000570510 SLC1A3P43003 542 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 IDH3GP51553 393 aaPredicted RBP9.68□□□□□ -0.86
VPS53-207ENST00000570510 TGFBR3Q03167 851 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 ZNF763Q0D2J5 394 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 IMPG1Q17R60 797 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 ZSWIM7Q19AV6 140 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 MST1LQ2TV78 715 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 VHLLQ6RSH7 139 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 SZRD1Q7Z422 152 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 C10orf107Q8IVU9 208 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 BPIFB2Q8N4F0 458 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 PIP4P2Q8N4L2 257 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 WDR60Q8WVS4 1066 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 TMEM186Q96B77 213 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 GATA5Q9BWX5 397 aaPredicted RBP9.68□□□□□ -0.86
VPS53-207ENST00000570510 UBQLN4Q9NRR5 601 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 DDX28Q9NUL7 540 aaKnown RBP9.68□□□□□ -0.86
VPS53-207ENST00000570510 UPB1Q9UBR1 384 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 AMDHD2Q9Y303 409 aa9.68□□□□□ -0.86
VPS53-207ENST00000570510 GPC6Q9Y625 555 aaPredicted RBP9.68□□□□□ -0.86
VPS53-207ENST00000570510 PCNX3Q9H6A9 2034 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 TMEM114B3SHH9 223 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 H3BNH8 94 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 GTPBP1O00178 669 aaKnown RBP9.67□□□□□ -0.86
VPS53-207ENST00000570510 CYTIPO60759 359 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 LINGO3P0C6S8 592 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 EDNRAP25101 427 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 ALDH3A1P30838 453 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 RPL3P39023 403 aaKnown RBP9.67□□□□□ -0.86
VPS53-207ENST00000570510 PRIM2P49643 509 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 PRKAG1P54619 331 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 PRPS1P60891 318 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 BEND6Q5SZJ8 279 aaPredicted RBP9.67□□□□□ -0.86
VPS53-207ENST00000570510 C9orf135Q5VTT2 229 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 KANK2Q63ZY3 851 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 OR2L13Q8N349 312 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 CEP70Q8NHQ1 597 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 PHOSPHO1Q8TCT1 267 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms