RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 WDR4P57081 412 aaKnown RBP9.07□□□□□ -0.96
LDLR-214ENST00000560628 TAB1Q15750 504 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 C3orf33Q6P1S2 294 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 FRRS1Q6ZNA5 592 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 ZNF621Q6ZSS3 439 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 TMPPEQ6ZT21 453 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 BHLHA15Q7RTS1 189 aaPredicted RBP9.07□□□□□ -0.96
LDLR-214ENST00000560628 SPATA19Q7Z5L4 167 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 ATG4DQ86TL0 474 aaPredicted RBP9.07□□□□□ -0.96
LDLR-214ENST00000560628 RNF130Q86XS8 419 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 ANKFN1Q8N957 763 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 TMEM171Q8WVE6 324 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 TMEM234Q8WY98 164 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 ST8SIA1Q92185 356 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 CNOT9Q92600 299 aaKnown RBP9.07□□□□□ -0.96
LDLR-214ENST00000560628 ZNF75CPQ92670 426 aaPredicted RBP9.07□□□□□ -0.96
LDLR-214ENST00000560628 NEUROG1Q92886 237 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 KISS1RQ969F8 398 aaPredicted RBP9.07□□□□□ -0.96
LDLR-214ENST00000560628 NEURL3Q96EH8 262 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 OR52E6Q96RD3 313 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 PSD2Q9BQI7 771 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 TMEM204Q9BSN7 226 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 SAP130Q9H0E3 1048 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 OR10A4Q9H209 315 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 BCO1Q9HAY6 547 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 GP6Q9HCN6 339 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 CTPS2Q9NRF8 586 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.07□□□□□ -0.96
LDLR-214ENST00000560628 AIG1Q9NVV5 245 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 KLHL9Q9P2J3 617 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 FREM1Q5H8C1 2179 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 NAV3Q8IVL0 2385 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 TMEM120BA0PK00 339 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 HMGN4O00479 90 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 CLOCKO15516 846 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 ZNF500O60304 480 aaPredicted RBP9.06□□□□□ -0.96
LDLR-214ENST00000560628 ADAM11O75078 769 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 LYZL6O75951 148 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 IGHV3-9P01782 118 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 OR3A2P47893 321 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 IDH2P48735 452 aaKnown RBP9.06□□□□□ -0.96
LDLR-214ENST00000560628 KCNJ10P78508 379 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 ITGADQ13349 1161 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 P2RY6Q15077 328 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 STK11Q15831 433 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 SYPL1Q16563 259 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 KRTAP21-3Q3LHN1 58 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 SYT14P1Q58G82 188 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 COX20Q5RI15 118 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 NXNQ6DKJ4 435 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 OGFOD2Q6N063 350 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 PRSS57Q6UWY2 283 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 MTDHQ86UE4 582 aaKnown RBP9.06□□□□□ -0.96
LDLR-214ENST00000560628 ADGRG3Q86Y34 549 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 ZNF100Q8IYN0 542 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 KIRREL3Q8IZU9 778 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 ARFGAP2Q8N6H7 521 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 ZNF611Q8N823 705 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 LILRB1Q8NHL6 650 aaPredicted RBP9.06□□□□□ -0.96
LDLR-214ENST00000560628 PNPT1Q8TCS8 783 aaKnown RBP9.06□□□□□ -0.96
LDLR-214ENST00000560628 HSD17B8Q92506 261 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 ARL5BQ96KC2 179 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 CCDC115Q96NT0 180 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 PANX1Q96RD7 426 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 BDH2Q9BUT1 245 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 CCDC106Q9BWC9 280 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 GSX2Q9BZM3 304 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 OR11A1Q9GZK7 315 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 POLE3Q9NRF9 147 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 BTNL2Q9UIR0 455 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 LAMP3Q9UQV4 416 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 SLC35A3Q9Y2D2 325 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 GPR45Q9Y5Y3 372 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 USF3Q68DE3 2245 aa9.06□□□□□ -0.96
LDLR-214ENST00000560628 DPRXA6NFQ7 191 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 ZNF724A8MTY0 619 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 AP3D1O14617 1153 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 HDAC3O15379 428 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 CNOT4O95628 575 aaKnown RBP9.05□□□□□ -0.96
LDLR-214ENST00000560628 PGRP06401 933 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 CD3EP07766 207 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 CHRM4P08173 479 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 GUSBP08236 651 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 NR2F1P10589 423 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 IGHV1-2P23083 117 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 APOBEC1P41238 236 aaKnown RBP9.05□□□□□ -0.96
LDLR-214ENST00000560628 ATP5J2P56134 94 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 OR2B6P58173 313 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 CSNK2A1P68400 391 aaPredicted RBP9.05□□□□□ -0.96
LDLR-214ENST00000560628 HPCAP84074 193 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 PLAURQ03405 335 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 DPY19L1Q2PZI1 675 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 NCMAPQ5T1S8 102 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 AP1ARQ63HQ0 302 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 Q6ZT83 130 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 GALNT5Q7Z7M9 940 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 CROCCP2Q86T23 111 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 CCDC103Q8IW40 242 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 LRRC34Q8IZ02 419 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 UBE2J2Q8N2K1 259 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms