RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 TLCD2A6NGC4 264 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 FAM171A2A8MVW0 826 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 PTP4A3O75365 173 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 RCBTB2O95199 551 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 NXPH1P58417 271 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 C14orf28Q4W4Y0 310 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 FAM27D1Q5T7N8 215 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 VASNQ6EMK4 673 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 ZNF613Q6PF04 617 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 POMZP3Q6PJE2 187 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 ZNF322Q6U7Q0 402 aaPredicted RBP9.76□□□□□ -0.85
CUX1-217ENST00000558836 APOOLQ6UXV4 268 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 TMPRSS11AQ6ZMR5 421 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 GDPGP1Q6ZNW5 385 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 Q7L0L9 218 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 SLC25A45Q8N413 288 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 ZNF615Q8N8J6 731 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 TOR1AIP2Q8NFQ8 470 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 OR6C4Q8NGE1 309 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 PTPMT1Q8WUK0 201 aaPredicted RBP9.76□□□□□ -0.85
CUX1-217ENST00000558836 HPS1Q92902 700 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 KISS1RQ969F8 398 aaPredicted RBP9.76□□□□□ -0.85
CUX1-217ENST00000558836 ERMAPQ96PL5 475 aaPredicted RBP9.76□□□□□ -0.85
CUX1-217ENST00000558836 MCCC2Q9HCC0 563 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 FSCN3Q9NQT6 498 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 CUTCQ9NTM9 273 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 RABL2AQ9UBK7 228 aaPredicted RBP9.76□□□□□ -0.85
CUX1-217ENST00000558836 RPS6KB2Q9UBS0 482 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 FER1L5A0AVI2 2057 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 CEP192Q8TEP8 1941 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 DAPL1A0PJW8 107 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 FAM86C2PA6NEL3 165 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 CLPSP04118 112 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 FOLR1P15328 257 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 ATP12AP54707 1039 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 ZP2Q05996 745 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.76□□□□□ -0.85
CUX1-217ENST00000558836 FHL1Q13642 323 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 ZNF181Q2M3W8 571 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 GDPD3Q7L5L3 318 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 MARCH9Q86YJ5 346 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 ACBD7Q8N6N7 88 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 ATP6V1C2Q8NEY4 427 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 ZNRF4Q8WWF5 429 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 ZMYND19Q96E35 227 aaPredicted RBP9.76□□□□□ -0.85
CUX1-217ENST00000558836 ADOQ96SZ5 270 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 NXF5Q9H1B4 397 aaKnown RBP9.76□□□□□ -0.85
CUX1-217ENST00000558836 KLHL1Q9NR64 748 aa9.76□□□□□ -0.85
CUX1-217ENST00000558836 CRNNQ9UBG3 495 aaPredicted RBP9.76□□□□□ -0.85
CUX1-217ENST00000558836 EXOGQ9Y2C4 368 aaKnown RBP9.76□□□□□ -0.85
CUX1-217ENST00000558836 LILRA5A6NI73 299 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 MCIDASD6RGH6 385 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 SOX1O00570 391 aaPredicted RBP9.75□□□□□ -0.85
CUX1-217ENST00000558836 PIAS2O75928 621 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 IGHA1P01876 353 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 HPGDP15428 266 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 HIST1H1CP16403 213 aaKnown RBP9.75□□□□□ -0.85
CUX1-217ENST00000558836 GABRA5P31644 462 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 SKP1P63208 163 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 FUT7Q11130 342 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 FGFBP1Q14512 234 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 ZNF79Q15937 498 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 ARL9Q6T311 187 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 LYPD4Q6UWN0 246 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 SSX6Q7RTT6 188 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 SLC35F3Q8IY50 421 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 CELF2-AS1Q8N7Q2 184 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 ZSCAN1Q8NBB4 408 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 OR1L3Q8NH93 324 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 C1orf216Q8TAB5 229 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 PHOSPHO1Q8TCT1 267 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 HOXB13Q92826 284 aaPredicted RBP9.75□□□□□ -0.85
CUX1-217ENST00000558836 ZDHHC12Q96GR4 267 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 MSANTD3Q96H12 275 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 DIRAS2Q96HU8 199 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 RTN4RQ9BZR6 473 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 PPIL3Q9H2H8 161 aaKnown RBP9.75□□□□□ -0.85
CUX1-217ENST00000558836 MIXL1Q9H2W2 232 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 CMC2Q9NRP2 79 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.75□□□□□ -0.85
CUX1-217ENST00000558836 MED17Q9NVC6 651 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 ZNF346Q9UL40 294 aaKnown RBP9.75□□□□□ -0.85
CUX1-217ENST00000558836 GRIP1Q9Y3R0 1128 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 IER3IP1Q9Y5U9 82 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 V9GYH0 126 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 A0A1W2PPK0 400 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 SERINC4A6NH21 518 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 SAGE2PA6NJ88 616 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 J3QLW9 94 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 GABRPO00591 440 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 FMO6PO60774 539 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 ZNF19P17023 458 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 RPL4P36578 427 aaKnown RBP9.75□□□□□ -0.85
CUX1-217ENST00000558836 ACVR1BP36896 505 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 NAA10P41227 235 aaPredicted RBP9.75□□□□□ -0.85
CUX1-217ENST00000558836 HSD17B7P56937 341 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 OR12D2P58182 307 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 PSPHP78330 225 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 SLC3A1Q07837 685 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 GRM7Q14831 915 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms