RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 FCRL1Q96LA6 429 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 JSRP1Q96MG2 331 aaPredicted RBP3.85□□□□□ -1.79
SPG11-211ENST00000558561 SLC29A3Q9BZD2 475 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 UCK2Q9BZX2 261 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 ROGDIQ9GZN7 287 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 WWTR1Q9GZV5 400 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 CCDC134Q9H6E4 229 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 WDR55Q9H6Y2 383 aaPredicted RBP3.85□□□□□ -1.79
SPG11-211ENST00000558561 LRTM1Q9HBL6 345 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 SLC35C2Q9NQQ7 365 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 SIRT3Q9NTG7 399 aaPredicted RBP3.85□□□□□ -1.79
SPG11-211ENST00000558561 MS4A12Q9NXJ0 267 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 ALKBH4Q9NXW9 302 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 AHSPQ9NZD4 102 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 ABI3Q9P2A4 366 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 SPRR3Q9UBC9 169 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 SEC14L3Q9UDX4 400 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 PHF11Q9UIL8 331 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 UTS2RQ9UKP6 389 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 TMCO1Q9UM00 188 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 MRPS33Q9Y291 106 aaKnown RBP3.85□□□□□ -1.79
SPG11-211ENST00000558561 ZNF835Q9Y2P0 537 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 SLC6A5Q9Y345 797 aa3.85□□□□□ -1.79
SPG11-211ENST00000558561 CHCHD2Q9Y6H1 151 aaPredicted RBP3.85□□□□□ -1.79
SPG11-211ENST00000558561 INTS1Q8N201 2190 aaKnown RBP3.85□□□□□ -1.79
SPG11-211ENST00000558561 LRRK2Q5S007 2527 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 CELSR2Q9HCU4 2923 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 NPIPA5A0A0B4J1W7 369 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 C2orf92A0A1B0GVN3 265 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 TMEM120BA0PK00 339 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 C1orf226A1L170 272 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 CGB1A6NKQ9 187 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 NPIPA7E9PJI5 369 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 H0YC42 278 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 UPK1AO00322 258 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 SLC28A1O00337 649 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 CCL21O00585 134 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 RRHO14718 337 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 GMFGO60234 142 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ZIC3O60481 467 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 TSPAN2O60636 221 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 SCN2BO60939 215 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ICOSLGO75144 302 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 TRIM3O75382 744 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 CRCPO75575 148 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 REM1O75628 298 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 MLYCDO95822 493 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ENO1P06733 434 aaKnown RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 CYC1P08574 325 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 STSP08842 583 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ALDOCP09972 364 aaKnown RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 NPIPA8P0DM63 369 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ACP2P11117 423 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 G6PDP11413 515 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 CYP4B1P13584 511 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 HSD3B1P14060 373 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 CSNK2A2P19784 350 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 ZNF10P21506 573 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 ABCD3P28288 659 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 SERPINB1P30740 379 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 TLX1P31314 330 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 CASP3P42574 277 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ZFP36L2P47974 494 aaKnown RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 SLC1A6P48664 564 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 NCBP2P52298 156 aaKnown RBP eCLIP3.84□□□□□ -1.79
SPG11-211ENST00000558561 ARFIP1P53367 373 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 GAS1P54826 345 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 TPD52P55327 224 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 CLDN15P56746 228 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 FAM3BP58499 235 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 C21orf58P58505 322 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 KRTAP10-9P60411 292 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ABCE1P61221 599 aaKnown RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 UFM1P61960 85 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 RPL38P63173 70 aaKnown RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 SKP1P63208 163 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 PHEXP78562 749 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ACSM2AQ08AH3 577 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 RCN2Q14257 317 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 CASP8Q14790 479 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 CEBPEQ15744 281 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 PDCD2Q16342 344 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 NTRK2Q16620 822 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 TIGD6Q17RP2 521 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 GRAMD1BQ3KR37 738 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 GXYLT1Q4G148 440 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 SLC9B1Q4ZJI4 515 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 DCST1Q5T197 706 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ATPAF1Q5TC12 328 aaPredicted RBP3.84□□□□□ -1.79
SPG11-211ENST00000558561 SLC22A10Q63ZE4 541 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 TMEM198Q66K66 360 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ACSM2BQ68CK6 577 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 CRYBG3Q68DQ2 2970 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 OR52E8Q6IFG1 317 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 NIPAL1Q6NVV3 410 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 KLHL17Q6TDP4 642 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 TMEM107Q6UX40 140 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 ZNF813Q6ZN06 617 aa3.84□□□□□ -1.79
SPG11-211ENST00000558561 FAM47EQ6ZV65 393 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms