RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 MRPL43Q8N983 215 aaKnown RBP15.05■□□□□ 0
SHMT2-231ENST00000557433 DTX3Q8N9I9 347 aa15.05■□□□□ 0
SHMT2-231ENST00000557433 OR2T35Q8NGX2 323 aa15.05■□□□□ 0
SHMT2-231ENST00000557433 PFN4Q8NHR9 129 aa15.05■□□□□ 0
SHMT2-231ENST00000557433 RBP7Q96R05 134 aa15.05■□□□□ 0
SHMT2-231ENST00000557433 STACQ99469 402 aa15.05■□□□□ 0
SHMT2-231ENST00000557433 GSDMCQ9BYG8 508 aa15.05■□□□□ 0
SHMT2-231ENST00000557433 TMEM27Q9HBJ8 222 aa15.05■□□□□ 0
SHMT2-231ENST00000557433 FBXL3Q9UKT7 428 aa15.05■□□□□ 0
SHMT2-231ENST00000557433 C19orf53Q9UNZ5 99 aaPredicted RBP15.05■□□□□ 0
SHMT2-231ENST00000557433 PCDHGA9Q9Y5G4 932 aaKnown RBP15.05■□□□□ 0
SHMT2-231ENST00000557433 GABARAPH6UMI1 98 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 IFNA16P05015 189 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 ATP1B1P05026 303 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 TLX1P31314 330 aaPredicted RBP15.05■□□□□ -0
SHMT2-231ENST00000557433 RBM34P42696 430 aaKnown RBP15.05■□□□□ -0
SHMT2-231ENST00000557433 GDI2P50395 445 aaKnown RBP15.05■□□□□ -0
SHMT2-231ENST00000557433 RPE65Q16518 533 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 UNQ9370/PRO34162Q6UXP9 181 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 WDR88Q6ZMY6 472 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 NUDT18Q6ZVK8 323 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 USP53Q70EK8 1073 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 ZNF784Q8NCA9 323 aaPredicted RBP15.05■□□□□ -0
SHMT2-231ENST00000557433 OR5J2Q8NH18 312 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 ZNF671Q8TAW3 534 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 ZFPM2Q8WW38 1151 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 MACROD1Q9BQ69 325 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 C20orf141Q9NUB4 165 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 SERTAD3Q9UJW9 196 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 POMT2Q9UKY4 750 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 MRPS7Q9Y2R9 242 aaKnown RBP15.05■□□□□ -0
SHMT2-231ENST00000557433 HCFC2Q9Y5Z7 792 aa15.05■□□□□ -0
SHMT2-231ENST00000557433 A0A087WV62 115 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 PRR19A6NJB7 356 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 MT-ND4P03905 459 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 WNT1P04628 370 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 IL9P15248 144 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 SIRPAP78324 504 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 CRMP1Q14194 572 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 GPR68Q15743 365 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 TJAP1Q5JTD0 557 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 MRPL2Q5T653 305 aaKnown RBP15.04■□□□□ -0
SHMT2-231ENST00000557433 C1orf53Q5VUE5 145 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 THSD4Q6ZMP0 1018 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 NLRC3Q7RTR2 1065 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 GPAT4Q86UL3 456 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 OR13C2Q8NGS9 318 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 SERINC2Q96SA4 455 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 C1QTNF7Q9BXJ2 289 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 TMPRSS13Q9BYE2 586 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 ENKD1Q9H0I2 346 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 KIR3DX1Q9H7L2 352 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 NPDC1Q9NQX5 325 aaPredicted RBP15.04■□□□□ -0
SHMT2-231ENST00000557433 CEP350Q5VT06 3117 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 A0A1W2PPL8 197 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 STATHP02808 62 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 MRPL3P09001 348 aaKnown RBP15.04■□□□□ -0
SHMT2-231ENST00000557433 POU2F2P09086 479 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 GIPP09681 153 aaPredicted RBP15.04■□□□□ -0
SHMT2-231ENST00000557433 MAT2AP31153 395 aaKnown RBP15.04■□□□□ -0
SHMT2-231ENST00000557433 BLVRAP53004 296 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 ZP1P60852 638 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 LGALS3BPQ08380 585 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 DCST2Q5T1A1 773 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 UBE2Q1Q7Z7E8 422 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 FTMTQ8N4E7 242 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 CDRT4Q8N9R6 151 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 OR6C4Q8NGE1 309 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 OR2T4Q8NH00 348 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 CLIP3Q96DZ5 547 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 CNN2Q99439 309 aaKnown RBP15.04■□□□□ -0
SHMT2-231ENST00000557433 UTP23Q9BRU9 249 aaKnown RBP15.04■□□□□ -0
SHMT2-231ENST00000557433 PPA2Q9H2U2 334 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 KLHL9Q9P2J3 617 aa15.04■□□□□ -0
SHMT2-231ENST00000557433 MDC1Q14676 2089 aaKnown RBP15.03■□□□□ -0
SHMT2-231ENST00000557433 A0A1W2PRG6 482 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 IL5P05113 134 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 ANKRD34CP0C6C1 535 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 LINC00271P0C7V0 271 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 CEBPBP17676 345 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 ZNF10P21506 573 aaPredicted RBP15.03■□□□□ -0
SHMT2-231ENST00000557433 MNDAP41218 407 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 RAP2BP61225 183 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 OLFML2AQ68BL7 652 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 TMEM65Q6PI78 240 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 KIAA1324Q6UXG2 1013 aaKnown RBP15.03■□□□□ -0
SHMT2-231ENST00000557433 PAQR7Q86WK9 346 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 FAM20CQ8IXL6 584 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 RBPMSQ93062 196 aaKnown RBP15.03■□□□□ -0
SHMT2-231ENST00000557433 METTL17Q9H7H0 456 aaPredicted RBP15.03■□□□□ -0
SHMT2-231ENST00000557433 GPN1Q9HCN4 374 aaPredicted RBP15.03■□□□□ -0
SHMT2-231ENST00000557433 HRASLSQ9HDD0 168 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 PRSS16Q9NQE7 514 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 ZNF224Q9NZL3 707 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 OR6C2Q9NZP2 312 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 COLEC10Q9Y6Z7 277 aa15.03■□□□□ -0
SHMT2-231ENST00000557433 URADA6NGE7 173 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 SNRPGP15A8MWD9 76 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 KRT33AO76009 404 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 GUSBP08236 651 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms