RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 MGAT2Q10469 447 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 EBPQ15125 230 aaKnown RBP11.33□□□□□ -0.6
SHMT2-230ENST00000557427 IFI44LQ53G44 452 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 TRMT12Q53H54 448 aaKnown RBP11.33□□□□□ -0.6
SHMT2-230ENST00000557427 TTC33Q6PID6 262 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-230ENST00000557427 VTCN1Q7Z7D3 282 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 GALNT10Q86SR1 603 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 PRR22Q8IZ63 422 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 TMEM251Q8N6I4 163 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 METTL25Q8N6Q8 603 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 ZNF555Q8NEP9 628 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 OR7G1Q8NGA0 311 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 OR10G3Q8NGC4 313 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 OR5AK3PQ8NH89 298 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 NFKBIDQ8NI38 313 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 SFXN5Q8TD22 340 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 LZICQ8WZA0 190 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 MAL2Q969L2 176 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 SPACA9Q96E40 222 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-230ENST00000557427 CNRIP1Q96F85 164 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-230ENST00000557427 JSRP1Q96MG2 331 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-230ENST00000557427 YIPF4Q9BSR8 244 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 SMURF2Q9HAU4 748 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 SLC35C2Q9NQQ7 365 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 THUMPD1Q9NXG2 353 aaKnown RBP11.33□□□□□ -0.6
SHMT2-230ENST00000557427 VNN3Q9NY84 501 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 ACAD8Q9UKU7 415 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 MAGED1Q9Y5V3 778 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-230ENST00000557427 EML6Q6ZMW3 1958 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 HSPB2A8KAH6 182 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 MYO1GB0I1T2 1018 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 hCG_2039718K7EN88 272 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 ACOT7O00154 380 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 PHF1O43189 567 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-230ENST00000557427 NME6O75414 186 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-230ENST00000557427 PGM3O95394 542 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 FBXO45P0C2W1 286 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 BMP7P18075 431 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 CDK9P50750 372 aaKnown RBP11.32□□□□□ -0.6
SHMT2-230ENST00000557427 RPS6KA3P51812 740 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 FBXW4P57775 412 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 MAP4K2Q12851 820 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 IL18R1Q13478 541 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 SLC10A1Q14973 349 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 LTB4RQ15722 352 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 HSPB2Q16082 182 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 PRICKLE4Q2TBC4 344 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 C6orf120Q7Z4R8 191 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 SLC22A16Q86VW1 577 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 LRRC25Q8N386 305 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-230ENST00000557427 KAT2AQ92830 837 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 ADIPOR1Q96A54 375 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 TP53INP1Q96A56 240 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 TAMM41Q96BW9 452 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 MOAP1Q96BY2 351 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 PERPQ96FX8 193 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 TPD52L3Q96J77 140 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 ZNF681Q96N22 645 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 AMDHD1Q96NU7 426 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 ZNF347Q96SE7 839 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 MBOAT4Q96T53 435 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 EPYCQ99645 322 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 TOR3AQ9H497 397 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 GLIPR2Q9H4G4 154 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 REEP1Q9H902 201 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 ANKRA2Q9H9E1 313 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 FAM118AQ9NWS6 357 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 MAT2BQ9NZL9 334 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 SPRR3Q9UBC9 169 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 TMEFF2Q9UIK5 374 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-230ENST00000557427 FOXD3Q9UJU5 478 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-230ENST00000557427 DTX4Q9Y2E6 619 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 ORC6Q9Y5N6 252 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 SNX8Q9Y5X2 465 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 NPFFR2Q9Y5X5 522 aa11.32□□□□□ -0.6
SHMT2-230ENST00000557427 A0A087WXM4 84 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 FAM47E-STBD1D6RA91 191 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 M0QX08 132 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 TP53I11O14683 189 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 SLC16A6O15403 523 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 GOSR1O95249 250 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 ATP1B1P05026 303 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 ITGA2P17301 1181 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 CEACAM8P31997 349 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-230ENST00000557427 ALDH3B2P48448 385 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 CCT3P49368 545 aaKnown RBP11.31□□□□□ -0.6
SHMT2-230ENST00000557427 ANXA11P50995 505 aaKnown RBP11.31□□□□□ -0.6
SHMT2-230ENST00000557427 NRG3P56975 720 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 FOXO1Q12778 655 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 HSPB3Q12988 150 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 DUSP8Q13202 625 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 NNATQ16517 81 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 ZIK1Q3SY52 487 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-230ENST00000557427 SPDYE7PQ495Y7 208 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 REEP3Q6NUK4 255 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 ARMC8Q8IUR7 673 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 HS3ST5Q8IZT8 346 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 ZNF786Q8N393 782 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 FAM109AQ8N4B1 249 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 ZNF441Q8N8Z8 693 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms