RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 MS4A4EQ96PG1 132 aa8.89□□□□□ -0.99
SCFD1-220ENST00000556486 ACTR6Q9GZN1 396 aa8.89□□□□□ -0.99
SCFD1-220ENST00000556486 SHARPINQ9H0F6 387 aa8.89□□□□□ -0.99
SCFD1-220ENST00000556486 CHODLQ9H9P2 273 aa8.89□□□□□ -0.99
SCFD1-220ENST00000556486 LRTM1Q9HBL6 345 aa8.89□□□□□ -0.99
SCFD1-220ENST00000556486 TNFRSF12AQ9NP84 129 aa8.89□□□□□ -0.99
SCFD1-220ENST00000556486 UBQLN4Q9NRR5 601 aa8.89□□□□□ -0.99
SCFD1-220ENST00000556486 MED17Q9NVC6 651 aa8.89□□□□□ -0.99
SCFD1-220ENST00000556486 C1orf109Q9NX04 203 aa8.89□□□□□ -0.99
SCFD1-220ENST00000556486 MCTS1Q9ULC4 181 aaKnown RBP8.89□□□□□ -0.99
SCFD1-220ENST00000556486 A0A1W2PP18 115 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 GOLGA8RI6L899 631 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 PLIN3O60664 434 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 KCNK2O95069 426 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 LINGO3P0C6S8 592 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 DANCRP0C864 163 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 PABPC4LP0CB38 370 aaKnown RBP8.88□□□□□ -0.99
SCFD1-220ENST00000556486 MYL2P10916 166 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 NEFHP12036 1026 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 AGTR1P30556 359 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 SDHAP31040 664 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 EIF1P41567 113 aaKnown RBP8.88□□□□□ -0.99
SCFD1-220ENST00000556486 CTBP2P56545 445 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 SLC18A2Q05940 514 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 ETFDHQ16134 617 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 TMEM249Q2WGJ8 235 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 CCDC153Q494R4 210 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 MFSD12Q6NUT3 480 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 DNM1P46Q6ZS02 220 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 Q6ZSR9 355 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 GALNT10Q86SR1 603 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 STK32CQ86UX6 486 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 TRABD2AQ86V40 505 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 GABRG1Q8N1C3 465 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 CCNYL1Q8N7R7 359 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 CEP112Q8N8E3 955 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 SLC16A11Q8NCK7 471 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 ZFP28Q8NHY6 868 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 CDC26Q8NHZ8 85 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 GPR151Q8TDV0 419 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 RNF128Q8TEB7 428 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 PIK3R3Q92569 461 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 MTERF3Q96E29 417 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 TRMOQ9BU70 441 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 HDHD5Q9BXW7 423 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 REEP4Q9H6H4 257 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 C7orf69Q9H7B7 122 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 MANSC1Q9H8J5 431 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 DUSP22Q9NRW4 184 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 GIN1Q9NXP7 522 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 VDAC3Q9Y277 283 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 TMED5Q9Y3A6 229 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 RNF115Q9Y4L5 304 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 ALPK2Q86TB3 2170 aa8.88□□□□□ -0.99
SCFD1-220ENST00000556486 A0A096LNT2 108 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 A0A0J9YW62 118 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 LOC100996750A0A140TA64 210 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 ETV2O00321 342 aaPredicted RBP8.87□□□□□ -0.99
SCFD1-220ENST00000556486 SLC28A1O00337 649 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 RGS14O43566 566 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 SPRY1O43609 319 aaPredicted RBP8.87□□□□□ -0.99
SCFD1-220ENST00000556486 SEC22BO75396 215 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 GCM2O75603 506 aaPredicted RBP8.87□□□□□ -0.99
SCFD1-220ENST00000556486 SYNGR4O95473 234 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 PLGP00747 810 aaPredicted RBP8.87□□□□□ -0.99
SCFD1-220ENST00000556486 OPN1LWP04000 364 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 TUBBP07437 444 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 ACP2P11117 423 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 SRD5A1P18405 259 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 SDC1P18827 310 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 ME2P23368 584 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 CRHR1P34998 444 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 CCT5P48643 541 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 ZNF41P51814 821 aaPredicted RBP8.87□□□□□ -0.99
SCFD1-220ENST00000556486 HSPB3Q12988 150 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 RNPS1Q15287 305 aaKnown RBP8.87□□□□□ -0.99
SCFD1-220ENST00000556486 ZNF239Q16600 458 aaKnown RBP8.87□□□□□ -0.99
SCFD1-220ENST00000556486 DUSP5Q16690 384 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 PGGHGQ32M88 737 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 ZNF385BQ569K4 471 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 MTERF4Q7Z6M4 381 aaKnown RBP8.87□□□□□ -0.99
SCFD1-220ENST00000556486 TDRPQ86YL5 185 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 IFT20Q8IY31 132 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 PRR18Q8N4B5 295 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 EIF1ADQ8N9N8 165 aaKnown RBP8.87□□□□□ -0.99
SCFD1-220ENST00000556486 NUP43Q8NFH3 380 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 STEAP2Q8NFT2 490 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 PSMA8Q8TAA3 256 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 POC1BQ8TC44 478 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 CIDECQ96AQ7 238 aaPredicted RBP8.87□□□□□ -0.99
SCFD1-220ENST00000556486 S100PBPQ96BU1 408 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 PPCDCQ96CD2 204 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 RNF145Q96MT1 663 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 STACQ99469 402 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 NPAS1Q99742 590 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 RHNO1Q9BSD3 238 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 KRTAP4-6Q9BYQ5 205 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 PRRG4Q9BZD6 226 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 EQTNQ9NQ60 294 aa8.87□□□□□ -0.99
SCFD1-220ENST00000556486 MALRD1Q5VYJ5 2156 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms