RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 Q96MT0 163 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 DEPDC7Q96QD5 511 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF426Q9BUY5 554 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 GPN2Q9H9Y4 310 aaPredicted RBP11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 HINT3Q9NQE9 182 aaKnown RBP11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 CACNA1HO95180 2353 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 GTPBP1O00178 669 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 LRRTM2O43300 516 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 SCO2O43819 266 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 MRPS14O60783 128 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 ETV5P41161 510 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 SOX3P41225 446 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 SLC9A3P48764 834 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 ETV1P50549 477 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 PSMD4P55036 377 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF117Q03924 483 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 ULK3Q6PHR2 472 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 LINC00114Q6XXX2 140 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 OVCH1Q7RTY7 1134 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 BMP8AQ7Z5Y6 402 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 CPOQ8IVL8 374 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 BMPERQ8N8U9 685 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 TOR1AIP2Q8NFQ8 470 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 RHBDD1Q8TEB9 315 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 RNFT2Q96EX2 444 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 SLC38A2Q96QD8 506 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 WDR77Q9BQA1 342 aaPredicted RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 CDCA4Q9BXL8 241 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 POLR2J2Q9GZM3 115 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 RPL36Q9Y3U8 105 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 WWP2O00308 870 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 BHLHE40O14503 412 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 TSPAN2O60636 221 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 CSO75390 466 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 PPP1R3DO95685 299 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 EMP2P54851 167 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 RNF4P78317 190 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 ROR2Q01974 943 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 TSTQ16762 297 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 OR5M10Q6IEU7 315 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 PLBD1Q6P4A8 553 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 TMPRSS11FQ6ZWK6 438 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 SLCO6A1Q86UG4 719 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 RNF113BQ8IZP6 322 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF441Q8N8Z8 693 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 FAM71CQ8NEG0 241 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 NFAM1Q8NET5 270 aaPredicted RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 OR4F15Q8NGB8 312 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 TMEM80Q96HE8 168 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 PLEKHA8Q96JA3 519 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 IFT27Q9BW83 186 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 TAPBPLQ9BX59 468 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 OR51E2Q9H255 320 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 MCCC2Q9HCC0 563 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 CFL2Q9Y281 166 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 LDOC1O95751 146 aaPredicted RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 CLUP10909 449 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 CDK4P11802 303 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 PIPP12273 146 aaPredicted RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 RPS3AP61247 264 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 SF3A2Q15428 464 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 OR2G6Q5TZ20 316 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 PAPD4Q6PIY7 484 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 OAFQ86UD1 273 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 GHDCQ8N2G8 530 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 CYB561A3Q8NBI2 242 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 CRB3Q9BUF7 120 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 KRCC1Q9NPI7 259 aaPredicted RBP11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 FBXL4Q9UKA2 621 aa11.66□□□□□ -0.54
VIPAS39-206ENST00000553888 MED12Q93074 2177 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 IGKV1D-42A0A075B6H8 117 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 LOC100506127A0A0U1RQW1 187 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 PNMA8CA0A1B0GUJ8 204 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 MASP2O00187 686 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF264O43296 627 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 HCRTR2O43614 444 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 HBQ1P09105 142 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 CTBP2P56545 445 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 COPZ1P61923 177 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 ZFP36L1Q07352 338 aaKnown RBP11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 CMIPQ8IY22 773 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 ALDH16A1Q8IZ83 802 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 CDK20Q8IZL9 346 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF527Q8NB42 609 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 BRIX1Q8TDN6 353 aaKnown RBP11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 SMAP2Q8WU79 429 aaPredicted RBP11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 ZFAND2BQ8WV99 257 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 FANCFQ9NPI8 374 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 SLC35A3Q9Y2D2 325 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 A0A087WUJ7 227 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 TRBV11-1A0A0K0K1C0 115 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 C4orf47A7E2U8 309 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 KDM4EB2RXH2 506 aaPredicted RBP11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 IMPA2O14732 288 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 PRODHO43272 600 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 PTP4A3O75365 173 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 BCL10O95999 233 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 NOS3P29474 1203 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 CDH11P55287 796 aa11.65□□□□□ -0.54
VIPAS39-206ENST00000553888 FBXW4P57775 412 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms