RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 ARFGEF3Q5TH69 2177 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 ABCD4O14678 606 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 DNPH1O43598 174 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 RAMP1O60894 148 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 STX11O75558 287 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 H6PDO95479 791 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 GUSBP08236 651 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 PGCP20142 388 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 IGHV1-2P23083 117 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 FKBP2P26885 142 aaKnown RBP11.35□□□□□ -0.59
PTCH1-218ENST00000548945 ALDH3A1P30838 453 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 DIO1P49895 249 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 CCR4P51679 360 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 DSCR9P59020 149 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 KRT71Q3SY84 523 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 FBXW9Q5XUX1 488 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 AP1ARQ63HQ0 302 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 ABLIM2Q6H8Q1 611 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 TMEM108Q6UXF1 575 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 TMPPEQ6ZT21 453 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 MTDHQ86UE4 582 aaKnown RBP11.35□□□□□ -0.59
PTCH1-218ENST00000548945 RIBC1Q8N443 379 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-218ENST00000548945 ZNF433Q8N7K0 673 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-218ENST00000548945 FNDC5Q8NAU1 212 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 RFWD2Q8NHY2 731 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 EPS8L3Q8TE67 593 aaKnown RBP11.35□□□□□ -0.59
PTCH1-218ENST00000548945 APOPT1Q96IL0 206 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 ADAD1Q96M93 576 aaKnown RBP11.35□□□□□ -0.59
PTCH1-218ENST00000548945 ZNF300Q96RE9 604 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-218ENST00000548945 THUMPD3Q9BV44 507 aaKnown RBP11.35□□□□□ -0.59
PTCH1-218ENST00000548945 DUSP26Q9BV47 211 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 YAE1D1Q9NRH1 226 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 ACER3Q9NUN7 267 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 GDF2Q9UK05 429 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-218ENST00000548945 B3GALT5Q9Y2C3 310 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 SPIN1Q9Y657 262 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-218ENST00000548945 MALRD1Q5VYJ5 2156 aa11.35□□□□□ -0.59
PTCH1-218ENST00000548945 SMIM23A6NLE4 172 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 RNF212BA8MTL3 300 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 A8MV72 311 aaPredicted RBP11.34□□□□□ -0.59
PTCH1-218ENST00000548945 SULT2B1O00204 365 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 GPR171O14626 319 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 ANKRD28O15084 1053 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 CFLARO15519 480 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 NDUFS7O75251 213 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 CSTAP01040 98 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 EDNRAP25101 427 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 PTAFRP25105 342 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 RNF144AP50876 292 aaPredicted RBP11.34□□□□□ -0.59
PTCH1-218ENST00000548945 SESN3P58005 492 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 HBA1P69905 142 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 MAD2L1Q13257 205 aaPredicted RBP11.34□□□□□ -0.59
PTCH1-218ENST00000548945 ARHGAP11BQ3KRB8 267 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 CHRFAM7AQ494W8 412 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 SYT14P1Q58G82 188 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 C1QTNF12Q5T7M4 302 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 IL23RQ5VWK5 629 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 KLHL17Q6TDP4 642 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 EIF3MQ7L2H7 374 aaKnown RBP11.34□□□□□ -0.59
PTCH1-218ENST00000548945 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.34□□□□□ -0.59
PTCH1-218ENST00000548945 KRTCAP2Q8N6L1 136 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 OR10H5Q8NGA6 315 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 OR5D16Q8NGK9 328 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 MIPOL1Q8TD10 442 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 ZHX1-C8orf76Q96EF9 292 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 C3orf30Q96M34 536 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 DHRS9Q9BPW9 319 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 C1orf50Q9BV19 199 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 ZNF350Q9GZX5 532 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 TMBIM4Q9HC24 238 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 POLE3Q9NRF9 147 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 CBLN4Q9NTU7 201 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 FAM53CQ9NYF3 392 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 NPAP1Q9NZP6 1156 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 GIMAP2Q9UG22 337 aa11.34□□□□□ -0.59
PTCH1-218ENST00000548945 SVEP1Q4LDE5 3571 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 A0A096LNT2 108 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 C9JVG2 144 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 SSX4O60224 188 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 AGR2O95994 175 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 DHRS4L1P0CG22 281 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 MATN1P21941 496 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 TTKP33981 857 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 APOBEC1P41238 236 aaKnown RBP11.33□□□□□ -0.6
PTCH1-218ENST00000548945 CLK1P49759 484 aaKnown RBP11.33□□□□□ -0.6
PTCH1-218ENST00000548945 NUDT6P53370 316 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 SLC16A1P53985 500 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 MERTKQ12866 999 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 GPR68Q15743 365 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 SMU1Q2TAY7 513 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 OR7E24Q6IFN5 339 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 C11orf71Q6IPW1 123 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 CLEC2AQ6UVW9 174 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 C6orf120Q7Z4R8 191 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 FAM71CQ8NEG0 241 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 OR5AK3PQ8NH89 298 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 PIGXQ8TBF5 258 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 TMEM158Q8WZ71 300 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 APH1AQ96BI3 265 aa11.33□□□□□ -0.6
PTCH1-218ENST00000548945 ZNF775Q96BV0 537 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms