RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	LDB3	O75112	727 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	ALX3	O95076	343 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	EML2	O95834	649 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	CHRNB1	P11230	501 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	RNH1	P13489	461 aa	Known RBP	12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	SOX9	P48436	509 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	ALG11	Q2TAA5	492 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	COL13A1	Q5TAT6	717 aa	Predicted RBP	12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	SLC6A19	Q695T7	634 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	FIGNL1	Q6PIW4	674 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	WDR88	Q6ZMY6	472 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	YIPF7	Q8N8F6	280 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	SNX33	Q8WV41	574 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	THRSP	Q92748	146 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	FGF14	Q92915	247 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	SMIM19	Q96E16	107 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	ABCG5	Q9H222	651 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	B3GAT2	Q9NPZ5	323 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	IL20RA	Q9UHF4	553 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	KCNE5	Q9UJ90	142 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	ICAM5	Q9UMF0	924 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	CAMK2A	Q9UQM7	478 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	RASD1	Q9Y272	281 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	SLC6A5	Q9Y345	797 aa		12.03	□□□□□ -0.48
CPSF7-223	ENST00000544669	LOC105369274	A0A096LPK9	316 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	LOC102723532	A0A0G2JNH3	316 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	ZNF749	O43361	778 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	GSTZ1	O43708	216 aa	Predicted RBP	12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	REM1	O75628	298 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	NCR1	O76036	304 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	TACSTD2	P09758	323 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	APEH	P13798	732 aa	Known RBP	12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	SHC1	P29353	583 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	CTH	P32929	405 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	AP3S2	P59780	193 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	UBE2I	P63279	158 aa	Known RBP	12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	SIRPA	P78324	504 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	MRPS10	P82664	201 aa	Known RBP	12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	SLC3A1	Q07837	685 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	STX4	Q12846	297 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	DYRK1A	Q13627	763 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	CRMP1	Q14194	572 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	FGFBP1	Q14512	234 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	NUP54	Q7Z3B4	507 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	LUZP2	Q86TE4	346 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	C7orf61	Q8IZ16	206 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	OR4N4	Q8N0Y3	316 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	TOMM5	Q8N4H5	51 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	FAM98A	Q8NCA5	519 aa	Known RBP	12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	OR52R1	Q8NGF1	315 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	OR51A7	Q8NH64	312 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	TRMT10A	Q8TBZ6	339 aa	Known RBP	12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	GHSR	Q92847	366 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	RIT1	Q92963	219 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	ANKRD9	Q96BM1	317 aa	Predicted RBP	12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	MRPL38	Q96DV4	380 aa	Known RBP	12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	MRGPRX1	Q96LB2	322 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	ERMAP	Q96PL5	475 aa	Predicted RBP	12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	OR2M2	Q96R28	347 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	MNT	Q99583	582 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	TIMP4	Q99727	224 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	MED28	Q9H204	178 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	MARCH7	Q9H992	704 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	SLC28A3	Q9HAS3	691 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	MEPE	Q9NQ76	525 aa	Predicted RBP	12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	ACOXL	Q9NUZ1	547 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	DNAJB12	Q9NXW2	375 aa	Known RBP	12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	MALT1	Q9UDY8	824 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	PRODH2	Q9UF12	536 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	ZNF337	Q9Y3M9	751 aa		12.02	□□□□□ -0.48
CPSF7-223	ENST00000544669	NIN	Q8N4C6	2090 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669		A0A0G2JMP0	313 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669		A0A0X1KG70	313 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	SHISA3	A0PJX4	238 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	SMIM30	A4D0T7	59 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	NAP1L6	A6NFF2	107 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	LRRN3	E7EW58	273 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	IMPA2	O14732	288 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	PPP1R3D	O95685	299 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	ECD	O95905	644 aa	Predicted RBP	12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	PNMT	P11086	282 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	POU3F3	P20264	500 aa	Predicted RBP	12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	PYCR1	P32322	319 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	CCR5	P51681	352 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	GNG2	P59768	71 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	RPL6	Q02878	288 aa	Known RBP	12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	ZNF85	Q03923	595 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	GPR176	Q14439	515 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	CDON	Q4KMG0	1287 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	PLA1A	Q53H76	456 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	ZNF362	Q5T0B9	420 aa	Predicted RBP	12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	CD276	Q5ZPR3	534 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	OR4M2	Q8NGB6	313 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	OR4M1	Q8NGD0	313 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	OR14A16	Q8NHC5	309 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	DEDD2	Q8WXF8	326 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	THAP4	Q8WY91	577 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	ART5	Q96L15	291 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	TNFRSF13C	Q96RJ3	184 aa		12.02	□□□□□ -0.49
CPSF7-223	ENST00000544669	DCLRE1C	Q96SD1	692 aa	Known RBP	12.02	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms