RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 STSP08842 583 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 GKN3PP0CG01 181 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 ZNF708P17019 499 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 PSMA4P25789 261 aaKnown RBP15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 PER3P56645 1201 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 B3GALT5-AS1P59052 145 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 FOXF1Q12946 379 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 NDUFAF6Q330K2 333 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 GXYLT1Q4G148 440 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 EEF1A1P5Q5VTE0 462 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 CLEC18BQ6UXF7 455 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 HMGN2P46Q86SG4 172 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 CARM1Q86X55 608 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 AQP12AQ8IXF9 295 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 LILRA2Q8N149 483 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 CADM2Q8N3J6 435 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 CLEC18CQ8NCF0 446 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 PYURFQ96I23 114 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 MCHR1Q99705 422 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 USP22Q9UPT9 525 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 SLC6A5Q9Y345 797 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 HDGFL3Q9Y3E1 203 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 ZNF337Q9Y3M9 751 aa15.82■□□□□ 0.12
CLSTN3-210ENST00000540931 TRAPPC13A5PLN9 417 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 ELOA3DA6NLF2 546 aaPredicted RBP15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 H3BML4 177 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 CIB2O75838 187 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 FCGR2AP12318 317 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 TACR3P29371 465 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 SLC7A1P30825 629 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 LHX2P50458 406 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 ZNF136P52737 540 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 SMIM11AP58511 58 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 CSNK2A1P68400 391 aaPredicted RBP15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 EIF2S3LQ2VIR3 472 aaKnown RBP15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 ELOA3BQ3SY89 546 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 GTF2IRD2BQ6EKJ0 949 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 GTF2IRD2Q86UP8 949 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 ULK2Q8IYT8 1036 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 ELOA3Q8NG57 546 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 GPR32P1Q8NGA4 272 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 ZHX1-C8orf76Q96EF9 292 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 UCN2Q96RP3 112 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 EPYCQ99645 322 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 POTEKPQ9BYX7 375 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 MAGIXQ9H6Y5 334 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 YY1AP1Q9H869 796 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 CALHM2Q9HA72 323 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 LIPGQ9Y5X9 500 aa15.81■□□□□ 0.12
CLSTN3-210ENST00000540931 TMED7-TICAM2A0A0A6YYA0 188 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 A8MVM7 634 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 B4DXG7 233 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 E9PLN8 166 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 H0Y3Z8 333 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 ADAMDEC1O15204 470 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 CHP2O43745 196 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 OR2T1O43869 369 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 OR5F1O95221 314 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 NCK1P16333 377 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 CRYBA2P53672 197 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 PLAURQ03405 335 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 ST3GAL3Q11203 375 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 FLOT2Q14254 428 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 MFSD13AQ14CX5 517 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 OR1Q1Q15612 314 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 TOMM34Q15785 309 aaPredicted RBP15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 GLIPR1L2Q4G1C9 344 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 FAM98BQ52LJ0 330 aaKnown RBP15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 ALG10BQ5I7T1 473 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 FAM156AQ8NDB6 213 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 OR6T1Q8NGN1 323 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 STK35Q8TDR2 534 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 SLC38A4Q969I6 547 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 WDYHV1Q96HA8 205 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 HSH2DQ96JZ2 352 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 KLHL15Q96M94 604 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 HS6ST2Q96MM7 605 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 ZFP3Q96NJ6 502 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 RAB3IPQ96QF0 476 aaPredicted RBP15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 ZNF347Q96SE7 839 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 VKORC1Q9BQB6 163 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 CADM1Q9BY67 442 aaKnown RBP15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 SLC19A3Q9BZV2 496 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 ANKRD19PQ9H560 264 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 SPRR3Q9UBC9 169 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 OSGIN1Q9UJX0 560 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 CAMK2AQ9UQM7 478 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 TRAPPC4Q9Y296 219 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 TMED7Q9Y3B3 224 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 ZNF175Q9Y473 711 aa15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 SPTAN1Q13813 2472 aaKnown RBP15.8■□□□□ 0.12
CLSTN3-210ENST00000540931 A0A0B4J2E0 115 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 A0A1B0GX12 115 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 BCAS1O75363 584 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 EPPINO95925 133 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 ACVR2AP27037 513 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 CA7P43166 264 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 RNF144AP50876 292 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 CLDN18P56856 261 aa15.79■□□□□ 0.12
CLSTN3-210ENST00000540931 TAS2R41P59536 307 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms