RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PTGES2Q9H7Z7 377 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 FKRPQ9H9S5 495 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 IL1RL2Q9HB29 575 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 NOX3Q9HBY0 568 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 GPR35Q9HC97 309 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 ERVK-5Q9HDB9 667 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 AGPAT4Q9NRZ5 378 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 GPR173Q9NS66 373 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 ZCCHC3Q9NUD5 404 aaKnown RBP5.09□□□□□ -1.59
CD44-236ENST00000533222 RLIMQ9NVW2 624 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 FAM118AQ9NWS6 357 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 MIOSQ9NXC5 875 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 GAR1Q9NY12 217 aaKnown RBP5.09□□□□□ -1.59
CD44-236ENST00000533222 POMT2Q9UKY4 750 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 PDE10AQ9Y233 779 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 POFUT2Q9Y2G5 429 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 ZFP30Q9Y2G7 519 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 TMED3Q9Y3Q3 217 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 PRSS21Q9Y6M0 314 aa5.09□□□□□ -1.59
CD44-236ENST00000533222 ZNF638Q14966 1978 aaKnown RBP5.09□□□□□ -1.6
CD44-236ENST00000533222 A0A087WUJ7 227 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 A0A1B0GUH1 482 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 EXOC1LA0A1B0GW35 172 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 URADA6NGE7 173 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 FAM74A7A6NL05 159 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 YDJCA8MPS7 323 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 TRIM49D1C9J1S8 452 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 C5orf58C9J3I9 102 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 DIRC3C9JPN6 131 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 K7ERI5 159 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 RNASET2O00584 256 aaKnown RBP5.08□□□□□ -1.6
CD44-236ENST00000533222 PDXKO00764 312 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 PRRG1O14668 218 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 ANKRD28O15084 1053 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 INPP4BO15327 924 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 CHADO15335 359 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 FOXN1O15353 648 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 FLRT2O43155 660 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 TGOLN2O43493 480 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 HPGDSO60760 199 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 MTX2O75431 263 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 TNFSF15O95150 251 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 HPP00738 406 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 EGFP01133 1207 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 APOC3P02656 99 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 SRPRAP08240 638 aaKnown RBP5.08□□□□□ -1.6
CD44-236ENST00000533222 HIST1H2AGP0C0S8 130 aaPredicted RBP5.08□□□□□ -1.6
CD44-236ENST00000533222 PEPDP12955 493 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 NCF1P14598 390 aaPredicted RBP5.08□□□□□ -1.6
CD44-236ENST00000533222 IL7RP16871 459 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 HIST1H2ADP20671 130 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 ZNF10P21506 573 aaPredicted RBP5.08□□□□□ -1.6
CD44-236ENST00000533222 FGF7P21781 194 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 SLC2A5P22732 501 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 FASP25445 335 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 CERS1P27544 350 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 LCN1P31025 176 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 COILP38432 576 aaPredicted RBP5.08□□□□□ -1.6
CD44-236ENST00000533222 IFNGR2P38484 337 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 MMP12P39900 470 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 EVX1P49640 407 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 DLX5P56178 289 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 TAS2R38P59533 333 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 PSG6Q00889 435 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 FABP9Q0Z7S8 132 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 NPRL3Q12980 569 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 TRA2AQ13595 282 aaKnown RBP eCLIP5.08□□□□□ -1.6
CD44-236ENST00000533222 RUNX2Q13950 521 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 DPYSL3Q14195 570 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 LARS2Q15031 903 aaKnown RBP5.08□□□□□ -1.6
CD44-236ENST00000533222 HMGN3Q15651 99 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 SYTL3Q4VX76 610 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 FAM74A3Q4VXF1 159 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 PYCR3Q53H96 274 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 ZRANB3Q5FWF4 1079 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 ATG9BQ674R7 924 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 RAP1GAP2Q684P5 730 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 HIST2H2AA3Q6FI13 130 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 DPY19L2P2Q6ZN68 376 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 GCNT7Q6ZNI0 430 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 MTSS1LQ765P7 747 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 FAM220AQ7Z4H9 259 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 RBM23Q86U06 439 aaKnown RBP5.08□□□□□ -1.6
CD44-236ENST00000533222 PIM3Q86V86 326 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 KMT5CQ86Y97 462 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 WDFY1Q8IWB7 410 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 DCUN1D3Q8IWE4 304 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 SLC22A15Q8IZD6 547 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 GATSQ8NAP1 163 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 OR5M9Q8NGP3 310 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 DNAJB14Q8TBM8 379 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 CXorf40AQ8TE69 158 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 CA5BP1Q8WTZ4 195 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 ORAOV1Q8WV07 137 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 LRTOMTQ8WZ04 291 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 C11orf40Q8WZ69 217 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 SMPDL3AQ92484 453 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 GHSRQ92847 366 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 RAB1CQ92928 201 aa5.08□□□□□ -1.6
CD44-236ENST00000533222 SCAMP4Q969E2 229 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms