RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 DCXRQ7Z4W1 244 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ADCK2Q7Z695 626 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 TAF8Q7Z7C8 310 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 LHFPL4Q7Z7J7 247 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 TIGD4Q8IY51 512 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 TDHQ8IZJ6 230 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 BBS1Q8NFJ9 593 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 OR2T34Q8NGX1 318 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 LKAAEAR1Q8TD35 194 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 SAP25Q8TEE9 199 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 NAT14Q8WUY8 206 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 P3H4Q92791 437 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 MYDGFQ969H8 173 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 KIAA1143Q96AT1 154 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 SLC25A36Q96CQ1 311 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 OTUB2Q96DC9 234 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 PDXPQ96GD0 296 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 TMEM80Q96HE8 168 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 C9orf72Q96LT7 481 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 CSPG4P5Q96PW8 444 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 TRNT1Q96Q11 434 aaKnown RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 CCNL2Q96S94 520 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 KCNS3Q9BQ31 491 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 MGME1Q9BQP7 344 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 CNPY3Q9BT09 278 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ZSCAN5AQ9BUG6 496 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ZNF717Q9BY31 904 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 DERL2Q9GZP9 239 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ALX4Q9H161 411 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 BLZF1Q9H2G9 400 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 MTIF3Q9H2K0 278 aaKnown RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 NARFLQ9H6Q4 476 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 TDRD3Q9H7E2 651 aaKnown RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 COQ10BQ9H8M1 238 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 VIPAS39Q9H9C1 493 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 RPF1Q9H9Y2 349 aaKnown RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 CYP3A43Q9HB55 503 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 FOLH1BQ9HBA9 442 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 C20orf96Q9NUD7 363 aaPredicted RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 UFSP2Q9NUQ7 469 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ZNF581Q9P0T4 197 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 NYAP2Q9P242 653 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 APOBEC3BQ9UH17 382 aaKnown RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 CLEC2DQ9UHP7 191 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 NOCTQ9UK39 431 aaKnown RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 MRPS7Q9Y2R9 242 aaKnown RBP3.02□□□□□ -1.93
CD44-217ENST00000525348 TIAM1Q13009 1591 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 ATP7AQ04656 1500 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 A2MP01023 1474 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 LRRC9Q6ZRR7 1453 aa3.02□□□□□ -1.93
CD44-217ENST00000525348 MYH11P35749 1972 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 MYH7P12883 1935 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 MSH6P52701 1360 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 RAB3GAP2Q9H2M9 1393 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 MYH13Q9UKX3 1938 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 NHSL1Q5SYE7 1610 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 OBSCNQ5VST9 7968 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 CLUHO75153 1309 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 PLXNC1O60486 1568 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 DIP2AQ14689 1571 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 TRBV5-4A0A0C4DH59 114 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 ARHGEF35A5YM69 484 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 C5orf51A6NDU8 294 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 USP27XA6NNY8 438 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 GABRR3A8MPY1 467 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 ZNF732B4DXR9 585 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 TXNDC9O14530 226 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 ITGB1BP1O14713 200 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 AIM2O14862 343 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 INPP4BO15327 924 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 SLC31A2O15432 143 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 EIF1BO60739 113 aaKnown RBP3.01□□□□□ -1.93
CD44-217ENST00000525348 DNAJB6O75190 326 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 CCNKO75909 580 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 ANGPTL1O95841 491 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 PNPP00491 289 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 GBAP04062 536 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 CSF2P04141 144 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 PGK2P07205 417 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 IGFBP1P08833 259 aaPredicted RBP3.01□□□□□ -1.93
CD44-217ENST00000525348 FAM58BPP0C7Q3 252 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 SP9P0CG40 484 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 RALBP11234 206 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 GFAPP14136 432 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 FDPSP14324 419 aaKnown RBP3.01□□□□□ -1.93
CD44-217ENST00000525348 FCGR2BP31994 310 aaPredicted RBP3.01□□□□□ -1.93
CD44-217ENST00000525348 FCGR2CP31995 323 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 GPX4P36969 197 aaPredicted RBP3.01□□□□□ -1.93
CD44-217ENST00000525348 GP5P40197 560 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 EIF1P41567 113 aaKnown RBP3.01□□□□□ -1.93
CD44-217ENST00000525348 OR3A1P47881 315 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 NT5C2P49902 561 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 CAPZA1P52907 286 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 PLK1P53350 603 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 CRYBA2P53672 197 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 NAGLUP54802 743 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 TAS2R60P59551 318 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 C1QTNF8P60827 252 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 SKP1P63208 163 aa3.01□□□□□ -1.93
CD44-217ENST00000525348 PSPHP78330 225 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms