RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 MED27Q6P2C8 311 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 EMBQ6PCB8 327 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 PAPD4Q6PIY7 484 aaKnown RBP6.3□□□□□ -1.4
SDCBP-208ENST00000520228 ASB18Q6ZVZ8 466 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 GOLGA7Q7Z5G4 137 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 ZNF843Q8N446 348 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 OR7G3Q8NG95 312 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 OR11G2Q8NGC1 345 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 OR5T3Q8NGG3 340 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 UTP15Q8TED0 518 aaKnown RBP6.3□□□□□ -1.4
SDCBP-208ENST00000520228 AENQ8WTP8 325 aaKnown RBP6.3□□□□□ -1.4
SDCBP-208ENST00000520228 METTL21AQ8WXB1 218 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 ATP6V1E2Q96A05 226 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 MS4A6EQ96DS6 147 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 TMEM19Q96HH6 336 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 RSRC1Q96IZ7 334 aaKnown RBP6.3□□□□□ -1.4
SDCBP-208ENST00000520228 MTERF1Q99551 399 aaKnown RBP6.3□□□□□ -1.4
SDCBP-208ENST00000520228 SLC25A23Q9BV35 468 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 PARD6BQ9BYG5 372 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 RHBGQ9H310 441 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 DCDC2Q9UHG0 476 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 CMAHPQ9Y471 501 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 ZNF462Q96JM2 2506 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 ATMQ13315 3056 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 H0YIV9 168 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 K7EM74 188 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 PSMD12O00232 456 aaPredicted RBP6.29□□□□□ -1.4
SDCBP-208ENST00000520228 E2F3O00716 465 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 SMAD9O15198 467 aaKnown RBP6.29□□□□□ -1.4
SDCBP-208ENST00000520228 ERI3O43414 337 aaKnown RBP6.29□□□□□ -1.4
SDCBP-208ENST00000520228 KLHL41O60662 606 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 B4GALT2O60909 372 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 DNAJB6O75190 326 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 CDH16O75309 829 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 ALOX12BO75342 701 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 CEACAM4O75871 244 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 TPPPO94811 219 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 CLDN9O95484 217 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 ALPPP05187 535 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 TUBBP07437 444 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 FHP07954 510 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 NUDT17P0C025 328 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 C8orf89P0DMQ9 161 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 SMIM10L1P0DMW3 83 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 RNH1P13489 461 aaKnown RBP6.29□□□□□ -1.4
SDCBP-208ENST00000520228 PORP16435 677 aaPredicted RBP6.29□□□□□ -1.4
SDCBP-208ENST00000520228 ZNF10P21506 573 aaPredicted RBP6.29□□□□□ -1.4
SDCBP-208ENST00000520228 JAK1P23458 1154 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 DEKP35659 375 aaKnown RBP6.29□□□□□ -1.4
SDCBP-208ENST00000520228 PLA2G16P53816 162 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 TGM3Q08188 693 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 RAPSNQ13702 412 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 ADPRMQ3LIE5 342 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 TMEM35AQ53FP2 167 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 IRAK1BP1Q5VVH5 260 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 LIPJQ5W064 366 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 ADNP2Q6IQ32 1131 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 KRTAP5-3Q6L8H2 238 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 TRIM40Q6P9F5 258 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 GFRALQ6UXV0 394 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 NDUFAF7Q7L592 441 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 ZNF441Q8N8Z8 693 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 FDCSPQ8NFU4 85 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 OR2L5Q8NG80 312 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 THAP6Q8TBB0 222 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 PPP4R1Q8TF05 950 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 ZNF473Q8WTR7 871 aaKnown RBP6.29□□□□□ -1.4
SDCBP-208ENST00000520228 C8orf44Q96CB5 159 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 CMTM7Q96FZ5 175 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 SMIM10Q96HG1 83 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 F2RL3Q96RI0 385 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 C1QTNF4Q9BXJ3 329 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 VN1R1Q9GZP7 353 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 AICDAQ9GZX7 198 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 NOL11Q9H8H0 719 aaKnown RBP6.29□□□□□ -1.4
SDCBP-208ENST00000520228 ZNF160Q9HCG1 818 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 GPR83Q9NYM4 423 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 TMEM216Q9P0N5 145 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 PCTPQ9UKL6 214 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 KCNS2Q9ULS6 477 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 TP53TG5Q9Y2B4 290 aa6.29□□□□□ -1.4
SDCBP-208ENST00000520228 SMG1Q96Q15 3661 aaKnown RBP6.29□□□□□ -1.4
SDCBP-208ENST00000520228 LOC102723996A0A087X1L8 192 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 NSG1A0A0A6YYJ2 146 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 A0A0G2JN53 185 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 A0A1W2PP11 408 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 A8MT66 165 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 C4orf51C9J302 202 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 SAP18O00422 153 aaKnown RBP6.28□□□□□ -1.4
SDCBP-208ENST00000520228 COPEO14579 308 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 OR7A17O14581 309 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 ACOT8O14734 319 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 ANKRD28O15084 1053 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 GLRA3O75311 464 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 SH3BGRLO75368 114 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 CDC123O75794 336 aaPredicted RBP6.28□□□□□ -1.4
SDCBP-208ENST00000520228 TBX6O95947 436 aaPredicted RBP6.28□□□□□ -1.4
SDCBP-208ENST00000520228 OTCP00480 354 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 HPP00738 406 aa6.28□□□□□ -1.4
SDCBP-208ENST00000520228 RPS17P08708 135 aaKnown RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms