RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 F5H0A9 414 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 CREBL2O60519 120 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 EIF2DP41214 584 aaKnown RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 INHBCP55103 352 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 DEFA6Q01524 100 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 RFLNAQ6ZTI6 216 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 METTL4Q8N3J2 472 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 PGBD5Q8N414 524 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 PRMT8Q9NR22 394 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 PLEKHJ1Q9NW61 149 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 IL37Q9NZH6 218 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 B3GALT1Q9Y5Z6 326 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 ATP6V1G2-DDX39BF2Z307 99 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 SLC43A1O75387 559 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 KLKB1P03952 638 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 DCNP07585 359 aaKnown RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 CA5AP35218 305 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 FXYD4P59646 89 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 KCNJ10P78508 379 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 TMEM176BQ3YBM2 270 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 CCDC71LQ8N9Z2 235 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 FBXO27Q8NI29 283 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 ACOT11Q8WXI4 607 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 C16orf58Q96GQ5 468 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 ZNF416Q9BWM5 594 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 C1QTNF2Q9BXJ5 285 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 CXCL16Q9H2A7 254 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 ACSS1Q9NUB1 689 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 TMEM265A0A087WTH1 108 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 A0A0A6YYH2 397 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 A6NJ64 397 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 POU4F3Q15319 338 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 DUSP6Q16828 381 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 PLCXD3Q63HM9 321 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 OR7G2Q8NG99 324 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 ZFPM2Q8WW38 1151 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 ARPC5LQ9BPX5 153 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 NUDT22Q9BRQ3 303 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 C1GALT1Q9NS00 363 aa12.28□□□□□ -0.44
PTPRF-215ENST00000496447 DCAF13Q9NV06 445 aaKnown RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 DHCR7Q9UBM7 475 aaKnown RBP12.28□□□□□ -0.44
PTPRF-215ENST00000496447 KRBOX1C9JBD0 128 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 PPP6CO00743 305 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 DHRS4L1P0CG22 281 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 RGS6P49758 472 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 TPMTP51580 245 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 WNT4P56705 351 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 BTN1A1Q13410 526 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 TMEM52BQ4KMG9 183 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 MRPL41Q8IXM3 137 aaKnown RBP12.27□□□□□ -0.44
PTPRF-215ENST00000496447 AP1S3Q96PC3 154 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 SEMA6CQ9H3T2 930 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 PADI1Q9ULC6 663 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 TLCD2A6NGC4 264 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 TSTD3H0UI37 97 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 GLSO94925 669 aaPredicted RBP12.27□□□□□ -0.44
PTPRF-215ENST00000496447 FUCA1P04066 466 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 CCL11P51671 97 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 ADARB1P78563 741 aaKnown RBP12.27□□□□□ -0.44
PTPRF-215ENST00000496447 GPR50Q13585 617 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 PTPRRQ15256 657 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 FAM217AQ8IXS0 508 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 CMTM1Q8IZ96 169 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 PAPD5Q8NDF8 572 aaKnown RBP12.27□□□□□ -0.44
PTPRF-215ENST00000496447 ZNF417Q8TAU3 575 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 SYT11Q9BT88 431 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 CLMPQ9H6B4 373 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 SPHK1Q9NYA1 384 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 PGAP2Q9UHJ9 254 aa12.27□□□□□ -0.44
PTPRF-215ENST00000496447 EEF1E1-BLOC1S5C9J1V9 151 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF264O43296 627 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 TAZQ16635 292 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 CCDC58Q4VC31 144 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 GDPGP1Q6ZNW5 385 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 ADAMTS19Q8TE59 1207 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 C22orf15Q8WYQ4 148 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 SORT1Q99523 831 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 SYNPO2LQ9H987 977 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 EMC9Q9Y3B6 208 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 IMPA1P29218 277 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 POLR2HP52434 150 aaKnown RBP12.27□□□□□ -0.45
PTPRF-215ENST00000496447 SYPL1Q16563 259 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 GSG1LQ6UXU4 331 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF534Q76KX8 674 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 BEST3Q8N1M1 668 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 TOMM40LQ969M1 308 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 OR52D1Q9H346 318 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 B3GNT2Q9NY97 397 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 ARNTLO00327 626 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 DBHP09172 617 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 CD79BP40259 229 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 TRNP1Q6NT89 227 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 ASB16Q96NS5 453 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 MMP28Q9H239 520 aa12.27□□□□□ -0.45
PTPRF-215ENST00000496447 F8W036 122 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 BLOC1S1P78537 153 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 RTN4RL1Q86UN2 441 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-215ENST00000496447 LKAAEAR1Q8TD35 194 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 GLYATL2Q8WU03 294 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms