RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 NPIPA7E9PJI5 369 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 PPIAL4DF5H284 164 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 ZSCAN12O43309 604 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 ZNF861PO60384 105 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 SMPD2O60906 423 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 TM7SF2O76062 418 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 LRATO95237 230 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 PCCBP05166 539 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 NPIPA8P0DM63 369 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 EPB41P11171 864 aaKnown RBP2.27□□□□□ -2.05
VPS50-219ENST00000495039 KRT13P13646 458 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 CD1BP29016 333 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 HPCAL1P37235 193 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 APOC4P55056 127 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 CSNK1G2P78368 415 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 MXD4Q14582 209 aaPredicted RBP2.27□□□□□ -2.05
VPS50-219ENST00000495039 RIPPLY2Q5TAB7 128 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 IL34Q6ZMJ4 242 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 ARMCX2Q7L311 632 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 LRRC43Q8N309 656 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 SVOPLQ8N434 492 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 CLDN19Q8N6F1 224 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 LINC01555Q8NAE3 123 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 STXBP6Q8NFX7 210 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 OR52I1Q8NGK6 324 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 RAET1EQ8TD07 263 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 TMEM101Q96IK0 257 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 PGLYRP4Q96LB8 373 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 ARHGDIGQ99819 225 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 GAL3ST1Q99999 423 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 SPATA16Q9BXB7 569 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 TMEM117Q9H0C3 514 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 MEAF6Q9HAF1 191 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 SLC35D1Q9NTN3 355 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 NUDT15Q9NV35 164 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 SDAD1Q9NVU7 687 aaKnown RBP eCLIP2.27□□□□□ -2.05
VPS50-219ENST00000495039 TBK1Q9UHD2 729 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 LAMP5Q9UJQ1 280 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 NPIPA1Q9UND3 350 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 UGT2A1Q9Y4X1 527 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 KDRP35968 1356 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 A0A1B0GWJ7 208 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 G3V4G9 280 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 RS1O15537 224 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 PRKYO43930 277 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 TPST2O60704 377 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 NOL3O60936 208 aaKnown RBP2.26□□□□□ -2.05
VPS50-219ENST00000495039 BCAS1O75363 584 aaPredicted RBP2.26□□□□□ -2.05
VPS50-219ENST00000495039 NEBLO76041 1014 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 HEXBP07686 556 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 ATP6V1C1P21283 382 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 ANXA13P27216 316 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 HTR1EP28566 365 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 YWHABP31946 246 aaKnown RBP2.26□□□□□ -2.05
VPS50-219ENST00000495039 PRKXP51817 358 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 LINC00315P59091 139 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 CNTN2Q02246 1040 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 ARFRP1Q13795 201 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 EBI3Q14213 229 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 ARL6IP1Q15041 203 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 SYPL1Q16563 259 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 TRIM16LQ309B1 348 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 FAM71F2Q6NXP2 309 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 ACOT7LQ6ZUV0 252 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 MKXQ8IYA7 352 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 H1FOOQ8IZA3 346 aaPredicted RBP2.26□□□□□ -2.05
VPS50-219ENST00000495039 DHRSXQ8N5I4 330 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 ZNF740Q8NDX6 193 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 RAPGEF5Q92565 580 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 MRPS31Q92665 395 aaKnown RBP2.26□□□□□ -2.05
VPS50-219ENST00000495039 SH3YL1Q96HL8 342 aaPredicted RBP2.26□□□□□ -2.05
VPS50-219ENST00000495039 C7orf34Q96L11 122 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 RIT2Q99578 217 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 RHBGQ9H310 441 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 RIBC2Q9H4K1 309 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 PALMDQ9NP74 551 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 TMOD2Q9NZR1 351 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 ERVW-1Q9UQF0 538 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 CDH10Q9Y6N8 788 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 MEGF6O75095 1541 aa2.26□□□□□ -2.05
VPS50-219ENST00000495039 A8MUA0 341 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 PEX11AO75192 247 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 ADCY5O95622 1261 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 TSPY4P0CV99 314 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 TSPY10P0CW01 314 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 POLR2EP19388 210 aaKnown RBP2.25□□□□□ -2.05
VPS50-219ENST00000495039 DRD5P21918 477 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 COX7A1P24310 79 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 CHI3L1P36222 383 aaPredicted RBP2.25□□□□□ -2.05
VPS50-219ENST00000495039 HSPA2P54652 639 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 HSD17B7P56937 341 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 NUP107P57740 925 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 SELPLGQ14242 412 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 NSDHLQ15738 373 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 ZNF630Q2M218 657 aaPredicted RBP2.25□□□□□ -2.05
VPS50-219ENST00000495039 SLC36A3Q495N2 470 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 GGTA1PQ4G0N0 100 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 KCNIP4Q6PIL6 250 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 ATP6V0D2Q8N8Y2 350 aa2.25□□□□□ -2.05
VPS50-219ENST00000495039 OR5L2Q8NGL0 311 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms