RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 MRGPREQ86SM8 312 aa15.27■□□□□ 0.04
CCDC88B-210ENST00000494566 CAMKVQ8NCB2 501 aa15.27■□□□□ 0.04
CCDC88B-210ENST00000494566 TMEM129A0AVI4 362 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 DAPL1A0PJW8 107 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 ADAM11O75078 769 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 RFPL3O75679 317 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 SAGP10523 405 aaPredicted RBP15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 GABRG2P18507 467 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 RPL6Q02878 288 aaKnown RBP15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 HTR4Q13639 388 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 FHL5Q5TD97 284 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 ARIH2OSQ8N7S6 290 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 OR11H7Q8NGC8 314 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 FANK1Q8TC84 345 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 AKAP1Q92667 903 aaKnown RBP eCLIP15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 PCOLCE2Q9UKZ9 415 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 IMPA2O14732 288 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 OR5F1O95221 314 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 APBB3O95704 486 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 STAT5AP42229 794 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 DGCR2P98153 550 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 ADAM15Q13444 863 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 NTRK2Q16620 822 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 RNLSQ5VYX0 342 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 OTPQ5XKR4 325 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 SFRP4Q6FHJ7 346 aaPredicted RBP15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 FAAP20Q6NZ36 180 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 LYPD4Q6UWN0 246 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF619Q8N2I2 560 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 METTL27Q8N6F8 245 aaPredicted RBP15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 CSNK1A1LQ8N752 337 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 FAM181AQ8N9Y4 354 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF431Q8TF32 576 aaPredicted RBP15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF350Q9GZX5 532 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 PIGUQ9H490 435 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 C19orf53Q9UNZ5 99 aaPredicted RBP15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 FLVCR2Q9UPI3 526 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 EXOSC1Q9Y3B2 195 aaKnown RBP15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 CDH10Q9Y6N8 788 aa15.27■□□□□ 0.03
CCDC88B-210ENST00000494566 TRDV1A0A1B0GX56 115 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 FAM171A2A8MVW0 826 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 CYR61O00622 381 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 RNF13O43567 381 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 PYCR1P32322 319 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 NAA10P41227 235 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 ARFIP1P53367 373 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 CLDN20P56880 219 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 TP53I3Q53FA7 332 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 TAF8Q7Z7C8 310 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 DEFB119Q8N690 84 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF485Q8NCK3 441 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 HSD17B8Q92506 261 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 CNOT9Q92600 299 aaKnown RBP15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 CCDC3Q9BQI4 270 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF649Q9BS31 505 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 IFT27Q9BW83 186 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 FN3KQ9H479 309 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 SIDT1Q9NXL6 827 aaKnown RBP15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 CD207Q9UJ71 328 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 CYP8B1Q9UNU6 501 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 SEC16AO15027 2179 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 SLC9B1P1A6NJY1 282 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 SNTNA6NMZ2 147 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 TNFSF14O43557 240 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 STX11O75558 287 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 ST6GAL1P15907 406 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 DUSP8Q13202 625 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 FZD5Q13467 585 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 PRICKLE4Q2TBC4 344 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 TMEM184AQ6ZMB5 413 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 Q6ZS52 159 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 FAM160A2Q8N612 972 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 OR52R1Q8NGF1 315 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 BAHD1Q8TBE0 780 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 TRMT10AQ8TBZ6 339 aaKnown RBP15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 TMEM239Q8WW34 195 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 LMAN2LQ9H0V9 348 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 NARFLQ9H6Q4 476 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 IL21RQ9HBE5 538 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 MRPS18AQ9NVS2 196 aaKnown RBP15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 HCN3Q9P1Z3 774 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 ARID1AO14497 2285 aa15.26■□□□□ 0.03
CCDC88B-210ENST00000494566 FRYLO94915 3013 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 A0A087WV48 116 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 URADA6NGE7 173 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 UNC119BA6NIH7 251 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 LRRN3E7EW58 273 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 STK25O00506 426 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 CHST10O43529 356 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF250P15622 560 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 TALDO1P37837 337 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 PPM1FP49593 454 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 CLDN12P56749 244 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 MAT1AQ00266 395 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 CLPPQ16740 277 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 NDUFAF6Q330K2 333 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 SSX6Q7RTT6 188 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 RANBP3LQ86VV4 465 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 TRIM63Q969Q1 353 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 RFT1Q96AA3 541 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms