RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 LRIF1Q5T3J3 769 aa22.02■■□□□ 1.12
UPF3A-209ENST00000492270 CMIPQ8IY22 773 aa22.02■■□□□ 1.12
UPF3A-209ENST00000492270 MAL2Q969L2 176 aa22.02■■□□□ 1.12
UPF3A-209ENST00000492270 DNAJA3Q96EY1 480 aa22.02■■□□□ 1.12
UPF3A-209ENST00000492270 REXO5Q96IC2 774 aaKnown RBP22.02■■□□□ 1.12
UPF3A-209ENST00000492270 LIME1Q9H400 295 aa22.02■■□□□ 1.12
UPF3A-209ENST00000492270 C12orf49Q9H741 205 aa22.02■■□□□ 1.12
UPF3A-209ENST00000492270 PLSCR4Q9NRQ2 329 aa22.02■■□□□ 1.12
UPF3A-209ENST00000492270 GLRX2Q9NS18 164 aa22.02■■□□□ 1.12
UPF3A-209ENST00000492270 RLIMQ9NVW2 624 aa22.02■■□□□ 1.12
UPF3A-209ENST00000492270 TESMINQ9Y4I5 508 aa22.02■■□□□ 1.12
UPF3A-209ENST00000492270 CELSR1Q9NYQ6 3014 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 NCF2P19878 526 aaPredicted RBP22.01■■□□□ 1.11
UPF3A-209ENST00000492270 SYT14P1Q58G82 188 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 CDC20BQ86Y33 519 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 PEX5LQ8IYB4 626 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 C10orf111Q8N326 155 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 OR52P1PQ8NH57 321 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 STON2Q8WXE9 905 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 PMM1Q92871 262 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 DACH2Q96NX9 599 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 SLC39A3Q9BRY0 314 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 ZNF385DQ9H6B1 395 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 SERINC1Q9NRX5 453 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 KLHL28Q9NXS3 571 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 ELOVL5Q9NYP7 299 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 CALML5Q9NZT1 146 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 VAPAQ9P0L0 249 aa22.01■■□□□ 1.11
UPF3A-209ENST00000492270 SMAD9O15198 467 aaKnown RBP22■■□□□ 1.11
UPF3A-209ENST00000492270 PABPC4LP0CB38 370 aaKnown RBP22■■□□□ 1.11
UPF3A-209ENST00000492270 CCNA2P20248 432 aa22■■□□□ 1.11
UPF3A-209ENST00000492270 UGT2B10P36537 528 aa22■■□□□ 1.11
UPF3A-209ENST00000492270 APOBEC1P41238 236 aaKnown RBP22■■□□□ 1.11
UPF3A-209ENST00000492270 RAC3P60763 192 aa22■■□□□ 1.11
UPF3A-209ENST00000492270 POU4F3Q15319 338 aa22■■□□□ 1.11
UPF3A-209ENST00000492270 ZNF550Q7Z398 422 aa22■■□□□ 1.11
UPF3A-209ENST00000492270 GRINAQ7Z429 371 aa22■■□□□ 1.11
UPF3A-209ENST00000492270 TUSC5Q8IXB3 177 aa22■■□□□ 1.11
UPF3A-209ENST00000492270 WFIKKN1Q96NZ8 548 aa22■■□□□ 1.11
UPF3A-209ENST00000492270 CHRNA9Q9UGM1 479 aa22■■□□□ 1.11
UPF3A-209ENST00000492270 ZNF443Q9Y2A4 671 aaPredicted RBP22■■□□□ 1.11
UPF3A-209ENST00000492270 TRBV5-3A0A0A0MS03 114 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 A0A0G2JND7 137 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 GKN3PP0CG01 181 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 TFPIP10646 304 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 DNAJA1P31689 397 aaKnown RBP21.99■■□□□ 1.11
UPF3A-209ENST00000492270 PCYT1AP49585 367 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 DIO1P49895 249 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 EPS8Q12929 822 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 FADDQ13158 208 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 GNA13Q14344 377 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 RNPS1Q15287 305 aaKnown RBP21.99■■□□□ 1.11
UPF3A-209ENST00000492270 LIN52Q52LA3 116 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 FBXW10Q5XX13 1052 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 GTF2IRD2BQ6EKJ0 949 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 NUFIP2Q7Z417 695 aaKnown RBP21.99■■□□□ 1.11
UPF3A-209ENST00000492270 GTF2IRD2Q86UP8 949 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 ADGRG3Q86Y34 549 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 KLHL4Q9C0H6 718 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 OR11A1Q9GZK7 315 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 RAD21L1Q9H4I0 556 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 IKZF5Q9H5V7 419 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 A4GALTQ9NPC4 353 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 KLHL13Q9P2N7 655 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 NDRG3Q9UGV2 375 aa21.99■■□□□ 1.11
UPF3A-209ENST00000492270 ING1Q9UK53 422 aaPredicted RBP21.99■■□□□ 1.11
UPF3A-209ENST00000492270 CDHR4A6H8M9 788 aa21.98■■□□□ 1.11
UPF3A-209ENST00000492270 PRKD3O94806 890 aa21.98■■□□□ 1.11
UPF3A-209ENST00000492270 BMP2P12643 396 aa21.98■■□□□ 1.11
UPF3A-209ENST00000492270 IRX1P78414 480 aaPredicted RBP21.98■■□□□ 1.11
UPF3A-209ENST00000492270 ANKRD34AQ69YU3 496 aa21.98■■□□□ 1.11
UPF3A-209ENST00000492270 C22orf34Q6ZV56 151 aa21.98■■□□□ 1.11
UPF3A-209ENST00000492270 SLC25A43Q8WUT9 341 aaPredicted RBP21.98■■□□□ 1.11
UPF3A-209ENST00000492270 ARL5BQ96KC2 179 aa21.98■■□□□ 1.11
UPF3A-209ENST00000492270 TMEM45AQ9NWC5 275 aa21.98■■□□□ 1.11
UPF3A-209ENST00000492270 THUMPD1Q9NXG2 353 aaKnown RBP21.98■■□□□ 1.11
UPF3A-209ENST00000492270 CHST2Q9Y4C5 530 aa21.98■■□□□ 1.11
UPF3A-209ENST00000492270 A0A0G2JPF8 293 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 A0A1W2PP18 115 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 TMEM247A6NEH6 219 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 CFAP73A6NFT4 308 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 HNRNPCL2B2RXH8 293 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 HNRNPCL3B7ZW38 293 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 C16orf97H3BN30 126 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 SULT2B1O00204 365 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 HNRNPCL1O60812 293 aaKnown RBP21.97■■□□□ 1.11
UPF3A-209ENST00000492270 HRGP04196 525 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 FESP07332 822 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 HNRNPCL4P0DMR1 293 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 TMEM201Q5SNT2 666 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 TMPPEQ6ZT21 453 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 CLIP4Q8N3C7 705 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 PSD2Q9BQI7 771 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 MED18Q9BUE0 208 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 OSGIN1Q9UJX0 560 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 SPIN1Q9Y657 262 aaPredicted RBP21.97■■□□□ 1.11
UPF3A-209ENST00000492270 PRR14LQ5THK1 2151 aa21.97■■□□□ 1.11
UPF3A-209ENST00000492270 TMED7-TICAM2A0A0A6YYA0 188 aa21.96■■□□□ 1.11
UPF3A-209ENST00000492270 A0A1W2PPR1 153 aa21.96■■□□□ 1.11
UPF3A-209ENST00000492270 TMEM72A0PK05 275 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms