RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 FOXJ3Q9UPW0 622 aa1.61□□□□□ -2.15
VPS50-216ENST00000484954 ASF1AQ9Y294 204 aa1.61□□□□□ -2.15
VPS50-216ENST00000484954 TRAPPC4Q9Y296 219 aa1.61□□□□□ -2.15
VPS50-216ENST00000484954 OARD1Q9Y530 152 aa1.61□□□□□ -2.15
VPS50-216ENST00000484954 CABIN1Q9Y6J0 2220 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 PIKFYVEQ9Y2I7 2098 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 IGHV3OR16-13A0A075B7E8 117 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 IGKV1D-8A0A087WSZ0 117 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 HELTA6NFD8 242 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 COLCA2A8K830 154 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 LAD1O00515 517 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 ECI2O75521 394 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 GNA14O95837 355 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 LGI1O95970 557 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 IGF1P05019 195 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 CA3P07451 260 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 PLEKP08567 350 aaPredicted RBP1.6□□□□□ -2.15
VPS50-216ENST00000484954 CLUP10909 449 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 TFPI2P48307 235 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 ATXN3P54252 364 aaPredicted RBP1.6□□□□□ -2.15
VPS50-216ENST00000484954 CHRNB3Q05901 458 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 RAB40BQ12829 278 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 CBX3Q13185 183 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 RSPO1Q2MKA7 263 aaPredicted RBP1.6□□□□□ -2.15
VPS50-216ENST00000484954 CCDC40Q4G0X9 1142 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 LINC01620Q4KN68 170 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 C1orf100Q5SVJ3 147 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 GPR157Q5UAW9 335 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 FAHD2BQ6P2I3 314 aaPredicted RBP1.6□□□□□ -2.15
VPS50-216ENST00000484954 Q6ZR03 302 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 RABEPKQ7Z6M1 372 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 LHFPL4Q7Z7J7 247 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 KRTAP13-1Q8IUC0 172 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 NPBQ8NG41 125 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 OR51G2Q8NGK0 314 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 OR6X1Q8NH79 312 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 ACER1Q8TDN7 264 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 NDRG1Q92597 394 aaKnown RBP1.6□□□□□ -2.15
VPS50-216ENST00000484954 ARPC1AQ92747 370 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 FAHD2AQ96GK7 314 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 NSMCE2Q96MF7 247 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 ACAT2Q9BWD1 397 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 DUSP16Q9BY84 665 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 OR11A1Q9GZK7 315 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 ACTR8Q9H981 624 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 DMAP1Q9NPF5 467 aaPredicted RBP1.6□□□□□ -2.15
VPS50-216ENST00000484954 NUFIP1Q9UHK0 495 aaKnown RBP1.6□□□□□ -2.15
VPS50-216ENST00000484954 RNF6Q9Y252 685 aa1.6□□□□□ -2.15
VPS50-216ENST00000484954 GPR179Q6PRD1 2367 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 CUX2O14529 1486 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 E9PBE3 544 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 B3GAT3O94766 335 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 IGLV3-19P01714 112 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 P04436 131 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 MRPL3P09001 348 aaKnown RBP1.59□□□□□ -2.15
VPS50-216ENST00000484954 CYP2B6P20813 491 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 ATP6V1B2P21281 511 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 TAS2R19P59542 299 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 SELENOTP62341 195 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 MAPK6Q16659 721 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 KLF17Q5JT82 389 aaPredicted RBP1.59□□□□□ -2.15
VPS50-216ENST00000484954 Q5W150 140 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 ZNF836Q6ZNA1 936 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 APTXQ7Z2E3 356 aaKnown RBP1.59□□□□□ -2.15
VPS50-216ENST00000484954 MIER3Q7Z3K6 550 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 ERASQ7Z444 233 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 SVOPLQ8N434 492 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 OR5AU1Q8NGC0 362 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 OR2L8Q8NGY9 312 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 FANK1Q8TC84 345 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 SELENOMQ8WWX9 145 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 TMEM186Q96B77 213 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 ZNF578Q96N58 590 aaPredicted RBP1.59□□□□□ -2.15
VPS50-216ENST00000484954 RUFY1Q96T51 708 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 SLC30A2Q9BRI3 323 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 ATG10Q9H0Y0 220 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 VCPKMTQ9H867 229 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 LHX9Q9NQ69 397 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 AGPAT5Q9NUQ2 364 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 DEC1Q9P2X7 70 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 MTRRQ9UBK8 725 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 CRCT1Q9UGL9 99 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 ATP6V1HQ9UI12 483 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 GNPTGQ9UJJ9 305 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 CLCA3PQ9Y6N3 262 aa1.59□□□□□ -2.15
VPS50-216ENST00000484954 PHF3Q92576 2039 aaKnown RBP1.58□□□□□ -2.16
VPS50-216ENST00000484954 A6NIZ1 184 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 DDX39AO00148 427 aaKnown RBP1.58□□□□□ -2.16
VPS50-216ENST00000484954 SDHDO14521 159 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 TPST2O60704 377 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 B4GALT2O60909 372 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 SS18L1O75177 396 aaPredicted RBP1.58□□□□□ -2.16
VPS50-216ENST00000484954 CA1P00915 261 aaPredicted RBP1.58□□□□□ -2.16
VPS50-216ENST00000484954 OPN1LWP04000 364 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 RRASP10301 218 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 ICAM2P13598 275 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 ZNF14P17017 642 aaPredicted RBP1.58□□□□□ -2.16
VPS50-216ENST00000484954 UQCRC2P22695 453 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 DPP4P27487 766 aa1.58□□□□□ -2.16
VPS50-216ENST00000484954 PLK1P53350 603 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms