RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SLC38A9Q8NBW4 561 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 NPEPL1Q8NDH3 523 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 OR5AU1Q8NGC0 362 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 OR4Q3Q8NH05 313 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 HMGCLL1Q8TB92 370 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 TMEM163Q8TC26 289 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 ACTRT1Q8TDG2 376 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 BLOC1S5Q8TDH9 187 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 NEK7Q8TDX7 302 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 FAM222BQ8WU58 562 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 TMEM239Q8WW34 195 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 SSMEM1Q8WWF3 244 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 GTF3AQ92664 365 aaKnown RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 TFGQ92734 400 aaPredicted RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 SMARCD2Q92925 531 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 CPNE4Q96A23 557 aaPredicted RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 CREB3L1Q96BA8 519 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 OTULINQ96BN8 352 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 RNF170Q96K19 258 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 CSPG4P5Q96PW8 444 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 WDR77Q9BQA1 342 aaPredicted RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 UTP23Q9BRU9 249 aaKnown RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 TTYH2Q9BSA4 534 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 C6orf62Q9GZU0 229 aaPredicted RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 SLC22A4Q9H015 551 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 METTL9Q9H1A3 318 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 GANQ9H2C0 597 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 IKZF5Q9H5V7 419 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 ASB7Q9H672 318 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 SMYD3Q9H7B4 428 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 C10orf88Q9H8K7 445 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 CNGB3Q9NQW8 809 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 DCAF13Q9NV06 445 aaKnown RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 NPAP1Q9NZP6 1156 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 CD274Q9NZQ7 290 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 CLN8Q9UBY8 286 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 ZNF490Q9ULM2 529 aaPredicted RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 CLEC4EQ9ULY5 219 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 RFX7Q2KHR2 1363 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 NPIPA5A0A0B4J1W7 369 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 LY6G6EA0A0G2JKS1 128 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 A0A1W2PNV4 684 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SLC5A10A0PJK1 596 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 LRP5LA4QPB2 252 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 C5orf60A6NFR6 353 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SRRM4A7MD48 611 aaKnown RBP3.66□□□□□ -1.82
VPS41-212ENST00000482217 ZNF487B1APH4 448 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 PRSS44E7EML9 344 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 NPIPA5E9PKD4 350 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 NPIPA3F8WFD2 350 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SYT7O43581 403 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SCO2O43819 266 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 CHST1O43916 411 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 TSPAN2O60636 221 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SLC19A2O60779 497 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 NDUFB8O95169 186 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 TNFAIP8O95379 198 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 NR3C1P04150 777 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 GSTT2P0CG29 244 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 GSTT2BP0CG30 244 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 HOXB2P14652 356 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 CHRNB2P17787 502 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 ZP3P21754 424 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 CD1CP29017 333 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SERPINB1P30740 379 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 CCKBRP32239 447 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 HPCAL1P37235 193 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 DDOSTP39656 456 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 NBL1P41271 181 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 RPL21P46778 160 aaKnown RBP3.66□□□□□ -1.82
VPS41-212ENST00000482217 HTR5AP47898 357 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 RGS6P49758 472 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 P2RY4P51582 365 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 XKP51811 444 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 RAP1GDS1P52306 607 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 NKX2-5P52952 324 aaPredicted RBP3.66□□□□□ -1.82
VPS41-212ENST00000482217 CTSCP53634 463 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 CDH12P55289 794 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 CD81P60033 236 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SULT2A1Q06520 285 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 KLRC3Q07444 240 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 RBBP4Q09028 425 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 AQP6Q13520 282 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 GANABQ14697 944 aaKnown RBP3.66□□□□□ -1.82
VPS41-212ENST00000482217 TMEM132DQ14C87 1099 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 CYTH1Q15438 398 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SPHARQ15513 63 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SLC9A3R2Q15599 337 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 NDUFA5Q16718 116 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 DUSP6Q16828 381 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 QRICH1Q2TAL8 776 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 NDUFAF6Q330K2 333 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 GLYR1Q49A26 553 aaPredicted RBP3.66□□□□□ -1.82
VPS41-212ENST00000482217 PIGGQ5H8A4 983 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SOHLH1Q5JUK2 328 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SAMD4BQ5PRF9 694 aaKnown RBP3.66□□□□□ -1.82
VPS41-212ENST00000482217 MEDAGQ5VYS4 303 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 UNQ6126/PRO20091Q6UXV3 157 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 GDPD4Q6W3E5 623 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SLC16A12Q6ZSM3 486 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms