RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 MRGPRX4Q96LA9 322 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 MTERF1Q99551 399 aaKnown RBP6.86□□□□□ -1.31
USP54-211ENST00000474929 SERPINI1Q99574 410 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 RTN4RQ9BZR6 473 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 GIMAP4Q9NUV9 329 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 NFU1Q9UMS0 254 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 SLC9A8Q9Y2E8 581 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 POLR3KQ9Y2Y1 108 aaPredicted RBP6.86□□□□□ -1.31
USP54-211ENST00000474929 PCNX3Q9H6A9 2034 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 OR6C65A6NJZ3 312 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 ZNF195O14628 629 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 TRAF3IP2O43734 574 aaPredicted RBP6.85□□□□□ -1.31
USP54-211ENST00000474929 UGDHO60701 494 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 MFAP3LO75121 409 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 PLATP00750 562 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 IGLV1-44P01699 117 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 IGFBP1P08833 259 aaPredicted RBP6.85□□□□□ -1.31
USP54-211ENST00000474929 LINGO3P0C6S8 592 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 HOXB1P14653 301 aaPredicted RBP6.85□□□□□ -1.31
USP54-211ENST00000474929 SHC1P29353 583 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 ZNF75DP51815 510 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 SLC16A1P53985 500 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 MVKQ03426 396 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 BST1Q10588 318 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 TBX2Q13207 712 aaPredicted RBP6.85□□□□□ -1.31
USP54-211ENST00000474929 SNTB2Q13425 540 aaKnown RBP6.85□□□□□ -1.31
USP54-211ENST00000474929 DAG1Q14118 895 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 TRIP13Q15645 432 aaPredicted RBP6.85□□□□□ -1.31
USP54-211ENST00000474929 LTB4RQ15722 352 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 TECRLQ5HYJ1 363 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 CCNYL2Q5T2Q4 361 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 LIPJQ5W064 366 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 AADACL2Q6P093 401 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 ANKRD16Q6P6B7 361 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 GDPGP1Q6ZNW5 385 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 MYLK4Q86YV6 388 aaPredicted RBP6.85□□□□□ -1.31
USP54-211ENST00000474929 FAM9CQ8IZT9 166 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 POMGNT2Q8NAT1 580 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 PDPRQ8NCN5 879 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 OR4N2Q8NGD1 307 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 B4GALNT2Q8NHY0 566 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 POC1BQ8TC44 478 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 MAGEE2Q8TD90 523 aaPredicted RBP6.85□□□□□ -1.31
USP54-211ENST00000474929 SLC25A43Q8WUT9 341 aaPredicted RBP6.85□□□□□ -1.31
USP54-211ENST00000474929 YIPF5Q969M3 257 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 RBMXL1Q96E39 390 aaKnown RBP6.85□□□□□ -1.31
USP54-211ENST00000474929 MARS2Q96GW9 593 aaKnown RBP6.85□□□□□ -1.31
USP54-211ENST00000474929 CHIAQ9BZP6 476 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 C16orf95Q9H693 158 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 NPHS2Q9NP85 383 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 SLC7A10Q9NS82 523 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 SLC6A13Q9NSD5 602 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 ABHD10Q9NUJ1 306 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 CES1P1Q9UKY3 287 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 ICAM5Q9UMF0 924 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 WIPI2Q9Y4P8 454 aa6.85□□□□□ -1.31
USP54-211ENST00000474929 A0A087WV62 115 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 A0A1W2PQD3 144 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 C9JVG2 144 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 H0YIV9 168 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 SCDO00767 359 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 ZNF432O94892 652 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 HSPA4LO95757 839 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 NUDT14O95848 222 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 IGKV3-15P01624 115 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 PTDSS1P48651 473 aaKnown RBP6.84□□□□□ -1.31
USP54-211ENST00000474929 CDK5R2Q13319 367 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 SLC29A2Q14542 456 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 LARS2Q15031 903 aaKnown RBP6.84□□□□□ -1.31
USP54-211ENST00000474929 C18orf21Q32NC0 220 aaPredicted RBP6.84□□□□□ -1.31
USP54-211ENST00000474929 VPS26BQ4G0F5 336 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 SEL1L2Q5TEA6 688 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 BTNL3Q6UXE8 466 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 Q6YL49 198 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 GSTA5Q7RTV2 222 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 MTERF4Q7Z6M4 381 aaKnown RBP6.84□□□□□ -1.31
USP54-211ENST00000474929 CNGA4Q8IV77 575 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 SLC16A11Q8NCK7 471 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 Q8NFD4 153 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 OR52E4Q8NGH9 312 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 SNX33Q8WV41 574 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 ZNF775Q96BV0 537 aaPredicted RBP6.84□□□□□ -1.31
USP54-211ENST00000474929 POPDC3Q9HBV1 291 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 SERINC1Q9NRX5 453 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 TMEM45AQ9NWC5 275 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 FLRT3Q9NZU0 649 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 OPTCQ9UBM4 332 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 OR5V1Q9UGF6 321 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 NOX1Q9Y5S8 564 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 INSIG2Q9Y5U4 225 aa6.84□□□□□ -1.31
USP54-211ENST00000474929 SPIN1Q9Y657 262 aaPredicted RBP6.84□□□□□ -1.31
USP54-211ENST00000474929 TRAV40A0A0B4J280 105 aa6.83□□□□□ -1.32
USP54-211ENST00000474929 IGHV1-69-2A0A0G2JMI3 117 aa6.83□□□□□ -1.32
USP54-211ENST00000474929 K7EPI3 171 aa6.83□□□□□ -1.32
USP54-211ENST00000474929 TAPBPO15533 448 aa6.83□□□□□ -1.32
USP54-211ENST00000474929 ZFPL1O95159 310 aa6.83□□□□□ -1.32
USP54-211ENST00000474929 OXSR1O95747 527 aaPredicted RBP6.83□□□□□ -1.32
USP54-211ENST00000474929 AHSGP02765 367 aa6.83□□□□□ -1.32
USP54-211ENST00000474929 GBAP04062 536 aa6.83□□□□□ -1.32
USP54-211ENST00000474929 ETS1P14921 441 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms