RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 MIPOL1Q8TD10 442 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 GTPBP3Q969Y2 492 aaKnown RBP11.75□□□□□ -0.53
CPSF4-210ENST00000469897 ROPN1LQ96C74 230 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 USB1Q9BQ65 265 aaKnown RBP11.75□□□□□ -0.53
CPSF4-210ENST00000469897 TMEM109Q9BVC6 243 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 CISD1Q9NZ45 108 aaKnown RBP11.75□□□□□ -0.53
CPSF4-210ENST00000469897 RAP2CQ9Y3L5 183 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 WDR45Q9Y484 360 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 MAGED1Q9Y5V3 778 aaPredicted RBP11.75□□□□□ -0.53
CPSF4-210ENST00000469897 PRAMEF27A3QJZ7 478 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 CLDN24A6NM45 220 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 BIRC5O15392 142 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 RGS16O15492 202 aaPredicted RBP11.74□□□□□ -0.53
CPSF4-210ENST00000469897 NDUFS7O75251 213 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 AGR2O95994 175 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 PTNP21246 168 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 IGHV1-2P23083 117 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 NTF4P34130 210 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 IDUAP35475 653 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 APOBEC1P41238 236 aaKnown RBP11.74□□□□□ -0.53
CPSF4-210ENST00000469897 SLC1A6P48664 564 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 NME5P56597 212 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 CSNK2A1P68400 391 aaPredicted RBP11.74□□□□□ -0.53
CPSF4-210ENST00000469897 KCNJ10P78508 379 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 CHRNEQ04844 493 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 CASP8Q14790 479 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 PPA1Q15181 289 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 PGGHGQ32M88 737 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 KRT71Q3SY84 523 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 GPAT3Q53EU6 434 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 SYT14P1Q58G82 188 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 ATAD3BQ5T9A4 648 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 LSRQ86X29 649 aaPredicted RBP11.74□□□□□ -0.53
CPSF4-210ENST00000469897 MUCL1Q96DR8 90 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 ZIM3Q96PE6 472 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 MDFIQ99750 246 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 CCDC106Q9BWC9 280 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 POTEKPQ9BYX7 375 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 NUF2Q9BZD4 464 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 TRIM2Q9C040 744 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 SAP130Q9H0E3 1048 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 PNPOQ9NVS9 261 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.74□□□□□ -0.53
CPSF4-210ENST00000469897 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.74□□□□□ -0.53
CPSF4-210ENST00000469897 V9GYY5 206 aaPredicted RBP11.74□□□□□ -0.53
CPSF4-210ENST00000469897 PCNX3Q9H6A9 2034 aa11.74□□□□□ -0.53
CPSF4-210ENST00000469897 A0A1W2PP18 115 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 ANKRD28O15084 1053 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 KIAA0513O60268 411 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 CD8AP01732 235 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 GUSBP08236 651 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 LBPP18428 481 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 GGT1P19440 569 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 CHI3L1P36222 383 aaPredicted RBP11.73□□□□□ -0.53
CPSF4-210ENST00000469897 ACVR1BP36896 505 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 IDH2P48735 452 aaKnown RBP11.73□□□□□ -0.53
CPSF4-210ENST00000469897 VEZF1Q14119 521 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 MPP2Q14168 576 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 SPANXN4Q5MJ08 99 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 TIMM23BQ5SRD1 257 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 AP1ARQ63HQ0 302 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 SAXO2Q658L1 398 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 WDR93Q6P2C0 686 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 DNAJC14Q6Y2X3 702 aaPredicted RBP11.73□□□□□ -0.53
CPSF4-210ENST00000469897 FRRS1Q6ZNA5 592 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 ADGRG3Q86Y34 549 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 CCDC103Q8IW40 242 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 UBE2J2Q8N2K1 259 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 ZNF433Q8N7K0 673 aaPredicted RBP11.73□□□□□ -0.53
CPSF4-210ENST00000469897 TESCQ96BS2 214 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 ARL5BQ96KC2 179 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 TEX37Q96LM6 180 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 SORT1Q99523 831 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 SLC35A5Q9BS91 424 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 REG4Q9BYZ8 158 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 OR11A1Q9GZK7 315 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 KCNK9Q9NPC2 374 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 POLE3Q9NRF9 147 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.73□□□□□ -0.53
CPSF4-210ENST00000469897 NPAP1Q9NZP6 1156 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 MARCOQ9UEW3 520 aaPredicted RBP11.73□□□□□ -0.53
CPSF4-210ENST00000469897 GDF2Q9UK05 429 aaPredicted RBP11.73□□□□□ -0.53
CPSF4-210ENST00000469897 ADAM21Q9UKJ8 722 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 SLC35A3Q9Y2D2 325 aa11.73□□□□□ -0.53
CPSF4-210ENST00000469897 CIB4A0PJX0 185 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 OR5H1A6NKK0 313 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 CCT8L1PA6NM43 557 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 ZNF716A6NP11 495 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 SHISA9B4DS77 424 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 ADAM11O75078 769 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 PGM3O95394 542 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 BGNP21810 368 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 S100A3P33764 101 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 OR2B6P58173 313 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 UFM1P61960 85 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 PLAURQ03405 335 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 FUT5Q11128 374 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 STX3Q13277 289 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 PDK3Q15120 406 aa11.72□□□□□ -0.53
CPSF4-210ENST00000469897 FAM174BQ3ZCQ3 159 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms