RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 C2orf80Q0P641 193 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 FOXF2Q12947 444 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 GANABQ14697 944 aaKnown RBP6.53□□□□□ -1.36
USP54-208ENST00000461520 IMPG1Q17R60 797 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 CCDC153Q494R4 210 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 OR5M10Q6IEU7 315 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 FAM71E1Q6IPT2 247 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 PAMR1Q6UXH9 720 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 ZYG11AQ6WRX3 759 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 IKBIPQ70UQ0 350 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 LUZP2Q86TE4 346 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 GRAMD2AQ8IUY3 354 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 SLC44A2Q8IWA5 706 aaPredicted RBP6.53□□□□□ -1.36
USP54-208ENST00000461520 CCNYL1Q8N7R7 359 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 OR4K17Q8NGC6 315 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 OR4N2Q8NGD1 307 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 KIF18AQ8NI77 898 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 LINC01560Q8TB33 94 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 EFHD2Q96C19 240 aaPredicted RBP6.53□□□□□ -1.36
USP54-208ENST00000461520 INTS12Q96CB8 462 aaKnown RBP6.53□□□□□ -1.36
USP54-208ENST00000461520 METTL2AQ96IZ6 378 aaKnown RBP6.53□□□□□ -1.36
USP54-208ENST00000461520 SFXN2Q96NB2 322 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 DACH2Q96NX9 599 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 KCNA7Q96RP8 456 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 RBM24Q9BX46 236 aaKnown RBP6.53□□□□□ -1.36
USP54-208ENST00000461520 EBPLQ9BY08 206 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 TXLNGYQ9BZA5 131 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 Q9N2J8 555 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 RRAGDQ9NQL2 400 aaPredicted RBP6.53□□□□□ -1.36
USP54-208ENST00000461520 TBK1Q9UHD2 729 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 MRTO4Q9UKD2 239 aaKnown RBP6.53□□□□□ -1.36
USP54-208ENST00000461520 ABCG2Q9UNQ0 655 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 C19orf53Q9UNZ5 99 aaPredicted RBP6.53□□□□□ -1.36
USP54-208ENST00000461520 PLEKHA6Q9Y2H5 1048 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 OR10H1Q9Y4A9 318 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 EXPH5Q8NEV8 1989 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 FBN3Q75N90 2809 aa6.53□□□□□ -1.36
USP54-208ENST00000461520 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 A0A1W2PPM1 405 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 VWC2LB2RUY7 222 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 B4DXG7 233 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 UPK1AO00322 258 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 FADS1O60427 444 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 PROP1O75360 226 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 NME6O75414 186 aaPredicted RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 CRCPO75575 148 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 TNFSF13O75888 250 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 PSMG1O95456 288 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 TGM6O95932 706 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 HRGP04196 525 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 UROSP10746 265 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 PRPH2P23942 346 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 PCYT1AP49585 367 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 PSMD4P55036 377 aaKnown RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 EEFSECP57772 596 aaKnown RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 DNAJB13P59910 316 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 POU6F2P78424 691 aaPredicted RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 ZNF155Q12901 538 aaPredicted RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 FOXD4Q12950 439 aaPredicted RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 KEAP1Q14145 624 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 ZNHIT3Q15649 155 aaPredicted RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 DECR1Q16698 335 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 FAM153CQ494X1 144 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 GLYR1Q49A26 553 aaPredicted RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 CFAP157Q5JU67 520 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 SH2D4BQ5SQS7 431 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 OR2A2Q6IF42 318 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 NOXRED1Q6NXP6 359 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 TMEM107Q6UX40 140 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 SH2D5Q6ZV89 423 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 CHMP1BQ7LBR1 199 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 GCNT2Q8N0V5 402 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 OR2L13Q8N349 312 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 FADS6Q8N9I5 356 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 EIF1ADQ8N9N8 165 aaKnown RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 CDC26Q8NHZ8 85 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 SMPDL3BQ92485 455 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 ELP4Q96EB1 424 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 LMF2Q9BU23 707 aaKnown RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 DSN1Q9H410 356 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 GLIPR2Q9H4G4 154 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 PTGES2Q9H7Z7 377 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 PLEKHF2Q9H8W4 249 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 PPCSQ9HAB8 311 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 MYNNQ9NPC7 610 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 DDX18Q9NVP1 670 aaKnown RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 MRPS18AQ9NVS2 196 aaKnown RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 NDRG3Q9UGV2 375 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 EMCNQ9ULC0 261 aa6.52□□□□□ -1.37
USP54-208ENST00000461520 RPH3AQ9Y2J0 694 aaPredicted RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 POLR3HQ9Y535 204 aaPredicted RBP6.52□□□□□ -1.37
USP54-208ENST00000461520 HRNRQ86YZ3 2850 aaPredicted RBP6.51□□□□□ -1.37
USP54-208ENST00000461520 NSD1Q96L73 2696 aaPredicted RBP6.51□□□□□ -1.37
USP54-208ENST00000461520 A0A1W2PNV4 684 aa6.51□□□□□ -1.37
USP54-208ENST00000461520 SLC22A20A6NK97 555 aa6.51□□□□□ -1.37
USP54-208ENST00000461520 CASKO14936 926 aa6.51□□□□□ -1.37
USP54-208ENST00000461520 SCO2O43819 266 aa6.51□□□□□ -1.37
USP54-208ENST00000461520 PLIN3O60664 434 aa6.51□□□□□ -1.37
USP54-208ENST00000461520 IL33O95760 270 aa6.51□□□□□ -1.37
USP54-208ENST00000461520 PROK1P58294 105 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms