RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 MVDP53602 400 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 FOXK2Q01167 660 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 NXNL2Q5VZ03 156 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 LYSMD4Q5XG99 296 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 TMEM151BQ8IW70 566 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 SETD6Q8TBK2 473 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 S100A16Q96FQ6 103 aaKnown RBP10.79□□□□□ -0.68
NPHP4-204ENST00000460696 ZDHHC12Q96GR4 267 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 MRGPRX1Q96LB2 322 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 RXFP3Q9NSD7 469 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 SERTAD3Q9UJW9 196 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 FAM25EA8MYX2 175 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 CCKBRP32239 447 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 MAGEA8P43361 318 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 HNRNPFP52597 415 aaKnown RBP10.79□□□□□ -0.68
NPHP4-204ENST00000460696 NRG3P56975 720 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 ULK3Q6PHR2 472 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 MFSD4AQ8N468 514 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 ACOT12Q8WYK0 555 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 MAP3K3Q99759 626 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 PPIEQ9UNP9 301 aaKnown RBP10.79□□□□□ -0.68
NPHP4-204ENST00000460696 POLR1CO15160 346 aaPredicted RBP10.79□□□□□ -0.68
NPHP4-204ENST00000460696 DPM1O60762 260 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 LILRB5O75023 590 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 MAS1P04201 325 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 FBXO45P0C2W1 286 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 STOMP27105 288 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 TSFMP43897 325 aaKnown RBP10.79□□□□□ -0.68
NPHP4-204ENST00000460696 GDI2P50395 445 aaKnown RBP10.79□□□□□ -0.68
NPHP4-204ENST00000460696 NR0B1P51843 470 aaKnown RBP10.79□□□□□ -0.68
NPHP4-204ENST00000460696 PLCXD2Q0VAA5 305 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 DBPQ10586 325 aaPredicted RBP10.79□□□□□ -0.68
NPHP4-204ENST00000460696 GRM7Q14831 915 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 KLHL24Q6TFL4 600 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 ZNF627Q7L945 461 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 OR8H3Q8N146 312 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 JAGN1Q8N5M9 183 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 FOXN4Q96NZ1 517 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 C11orf54Q9H0W9 315 aaPredicted RBP10.79□□□□□ -0.68
NPHP4-204ENST00000460696 SEC61A2Q9H9S3 476 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 NUDT15Q9NV35 164 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 MKL2Q9ULH7 1088 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 SLC17A4Q9Y2C5 497 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 PCDHGA3Q9Y5H0 932 aa10.79□□□□□ -0.68
NPHP4-204ENST00000460696 TMEM221A6NGB7 291 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 M0R296 226 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 MAGEB4O15481 346 aaPredicted RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 HYAL3O43820 417 aaPredicted RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 F13BP05160 661 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 HBQ1P09105 142 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 HTR1FP30939 366 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 AGERQ15109 404 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 TATDN3Q17R31 274 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 SLC25A25Q6KCM7 469 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 LRRC56Q8IYG6 542 aaPredicted RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 CLDN22Q8N7P3 220 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 TP53I13Q8NBR0 393 aaPredicted RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 ZNF431Q8TF32 576 aaPredicted RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 S100A13Q99584 98 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 B3GNT4Q9C0J1 378 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 OR2B2Q9GZK3 357 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 GPN1Q9HCN4 374 aaPredicted RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 RANGRFQ9HD47 186 aaPredicted RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 DIABLOQ9NR28 239 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 TSC2P49815 1807 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 SMAD9O15198 467 aaKnown RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 PAHP00439 452 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 NID1P14543 1247 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 ACTA2P62736 377 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 ACTG2P63267 376 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 PSPHP78330 225 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 MRPS21P82921 87 aaKnown RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 TEKQ02763 1124 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 TRAM1Q15629 374 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 SSX1Q16384 188 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 PRSS53Q2L4Q9 553 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 RPTNQ6XPR3 784 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 ZNF620Q6ZNG0 422 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 SP7Q8TDD2 431 aaPredicted RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 ZFPM2Q8WW38 1151 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 AKAP1Q92667 903 aaKnown RBP eCLIP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 ELSPBP1Q96BH3 223 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 JSRP1Q96MG2 331 aaPredicted RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 GPER1Q99527 375 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 FN3KQ9H479 309 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 TESQ9UGI8 421 aaKnown RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 BAIAP2Q9UQB8 552 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 LRRTM2O43300 516 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 ST6GAL1P15907 406 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 YPEL5P62699 121 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 FABP5Q01469 135 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 POU4F2Q12837 409 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 FGL2Q14314 439 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 LIN54Q6MZP7 749 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 UBE3DQ7Z6J8 389 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 PIAS4Q8N2W9 510 aaPredicted RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 GHSRQ92847 366 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 THAP7Q9BT49 309 aaPredicted RBP10.78□□□□□ -0.68
NPHP4-204ENST00000460696 NDUFB11Q9NX14 153 aa10.78□□□□□ -0.68
NPHP4-204ENST00000460696 ARRDC5A6NEK1 342 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms