RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 ZNF501Q96CX3 271 aaPredicted RBP12.55□□□□□ -0.4
CLK3-203ENST00000454830 SLC41A2Q96JW4 573 aa12.55□□□□□ -0.4
CLK3-203ENST00000454830 PCDHGA3Q9Y5H0 932 aa12.55□□□□□ -0.4
CLK3-203ENST00000454830 IER3IP1Q9Y5U9 82 aa12.55□□□□□ -0.4
CLK3-203ENST00000454830 SLC30A4O14863 429 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 ICOSLGO75144 302 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 NGFRP08138 427 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 MLLT11Q13015 90 aaPredicted RBP12.54□□□□□ -0.4
CLK3-203ENST00000454830 ZNF141Q15928 474 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 TMEM44Q2T9K0 475 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 EXOSC6Q5RKV6 272 aaKnown RBP12.54□□□□□ -0.4
CLK3-203ENST00000454830 NXNL2Q5VZ03 156 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 OR5M10Q6IEU7 315 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 PHC2Q8IXK0 858 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 SMOC1Q9H4F8 434 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 ERVMER34-1Q9H9K5 563 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 OSGIN1Q9UJX0 560 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 FBXL4Q9UKA2 621 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 STUB1Q9UNE7 303 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 SLC35A3Q9Y2D2 325 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 SLC35F4A4IF30 521 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 C17orf51A8MQB3 221 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 KDM4EB2RXH2 506 aaPredicted RBP12.54□□□□□ -0.4
CLK3-203ENST00000454830 HK1P19367 917 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 TCEA1P23193 301 aaKnown RBP12.54□□□□□ -0.4
CLK3-203ENST00000454830 GRK6P43250 576 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 ACY1Q03154 408 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 PMS2CLQ68D20 193 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 MARCH3Q86UD3 253 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 SLC37A3Q8NCC5 494 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 BRIX1Q8TDN6 353 aaKnown RBP12.54□□□□□ -0.4
CLK3-203ENST00000454830 SPRYD4Q8WW59 207 aaPredicted RBP12.54□□□□□ -0.4
CLK3-203ENST00000454830 HDHD5Q9BXW7 423 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 MMP27Q9H306 513 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 GALNT8Q9NY28 637 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 ADAM18Q9Y3Q7 739 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 ZNF264O43296 627 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 TBX1O43435 398 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 KLF4O43474 513 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 INHBBP09529 407 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 RPS25P62851 125 aaKnown RBP12.54□□□□□ -0.4
CLK3-203ENST00000454830 SPANXN2Q5MJ10 180 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 AADACL4Q5VUY2 407 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 RPL13AP3Q6NVV1 102 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 QSOX2Q6ZRP7 698 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 GID4Q8IVV7 300 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 OR6K6Q8NGW6 343 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 DNAJA4Q8WW22 397 aaPredicted RBP12.54□□□□□ -0.4
CLK3-203ENST00000454830 MESP1Q9BRJ9 268 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 POLE4Q9NR33 117 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 ZNF229Q9UJW7 825 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 MPDZO75970 2070 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 TTC28Q96AY4 2481 aa12.54□□□□□ -0.4
CLK3-203ENST00000454830 TGM4P49221 684 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 TRIM61Q5EBN2 209 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 WDR74Q6RFH5 385 aaPredicted RBP12.53□□□□□ -0.4
CLK3-203ENST00000454830 TMPRSS11FQ6ZWK6 438 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 SIRT6Q8N6T7 355 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 FN3KQ9H479 309 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 SRPK3Q9UPE1 567 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 A0A1B0GTQ1 180 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 LINC00854A0A1B0GVQ3 168 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 EFCAB7A8K855 629 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 HTR1FP30939 366 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 NAA10P41227 235 aaPredicted RBP12.53□□□□□ -0.4
CLK3-203ENST00000454830 FXYD6P3P58550 94 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 ERVK-25P63136 954 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 PLK5Q496M5 336 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 NKAIN1Q4KMZ8 207 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 ZNF574Q6ZN55 896 aaPredicted RBP12.53□□□□□ -0.4
CLK3-203ENST00000454830 MEPCEQ7L2J0 689 aaKnown RBP12.53□□□□□ -0.4
CLK3-203ENST00000454830 ATCAYQ86WG3 371 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 ACBD7Q8N6N7 88 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 SLC25A36Q96CQ1 311 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 ZMYND19Q96E35 227 aaPredicted RBP12.53□□□□□ -0.4
CLK3-203ENST00000454830 MED17Q9NVC6 651 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 MN1Q10571 1320 aaPredicted RBP12.53□□□□□ -0.4
CLK3-203ENST00000454830 A0A1W2PQM1 296 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 C2orf72A6NCS6 295 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 METTL15A6NJ78 407 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 FAM171A2A8MVW0 826 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 CTDSP2O14595 271 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 NDUFB2O95178 105 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 LIMS3P0CW19 117 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 LIMS4P0CW20 117 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 BIKQ13323 160 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 APOOLQ6UXV4 268 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 TMPRSS11AQ6ZMR5 421 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 PSD4Q8NDX1 1056 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 TM9SF4Q92544 642 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 GSTK1Q9Y2Q3 226 aa12.53□□□□□ -0.4
CLK3-203ENST00000454830 LSM2Q9Y333 95 aaKnown RBP12.53□□□□□ -0.4
CLK3-203ENST00000454830 CDC40O60508 579 aaKnown RBP eCLIP12.52□□□□□ -0.4
CLK3-203ENST00000454830 LYPD3O95274 346 aa12.52□□□□□ -0.4
CLK3-203ENST00000454830 TIAF1O95411 115 aa12.52□□□□□ -0.4
CLK3-203ENST00000454830 DDAH2O95865 285 aa12.52□□□□□ -0.4
CLK3-203ENST00000454830 GRAMD2AQ8IUY3 354 aa12.52□□□□□ -0.4
CLK3-203ENST00000454830 CENPSQ8N2Z9 138 aa12.52□□□□□ -0.4
CLK3-203ENST00000454830 LNX2Q8N448 690 aa12.52□□□□□ -0.4
CLK3-203ENST00000454830 TMEM99Q8N816 258 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms