RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 IGHV5-51A0A0C4DH38 117 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 TVP23AA6NH52 213 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 MEN1O00255 615 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 B4GAT1O43505 415 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 KIAA0513O60268 411 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 SLC16A7O60669 478 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 RGS9O75916 674 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CSN2P05814 226 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 LCKP06239 509 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ELAVL4P26378 380 aaKnown RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CBX5P45973 191 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ANKDD1AQ495B1 522 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 TP53I3Q53FA7 332 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF691Q5VV52 312 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF613Q6PF04 617 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 GDF7Q7Z4P5 450 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CPEB2Q7Z5Q1 589 aaKnown RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 TMEM163Q8TC26 289 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 TNFAIP8L1Q8WVP5 186 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 FSCN3Q9NQT6 498 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 PRDM7Q9NQW5 492 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 THSD1Q9NS62 852 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 PAK1IP1Q9NWT1 392 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 SLC7A11Q9UPY5 501 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 C4orf47A7E2U8 309 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 UPK1AO00322 258 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF432O94892 652 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 POLR2IP36954 125 aaKnown RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 WNT4P56705 351 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 MALLQ13021 153 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CMPK2Q5EBM0 449 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 BCL2L15Q5TBC7 163 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 C16orf52Q8NHV5 167 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 TMEM255BQ8WV15 326 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 TNFRSF13CQ96RJ3 184 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 FUNDC2Q9BWH2 189 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 IKZF5Q9H5V7 419 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 SLAMF7Q9NQ25 335 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 PCDHB16Q9NRJ7 776 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ING4Q9UNL4 249 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 OR2W5A6NFC9 320 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 RRP8O43159 456 aaKnown RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 CSO75390 466 aaKnown RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 NID1P14543 1247 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 FIP1L1Q6UN15 594 aaKnown RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 C5orf46Q6UWT4 87 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 UTS2BQ765I0 119 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 SPRED1Q7Z699 444 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 TMPRSS12Q86WS5 348 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 MORN4Q8NDC4 146 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 NANOS1Q8WY41 292 aaKnown RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 INTS14Q96SY0 518 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 SLC30A2Q9BRI3 323 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 KATNB1Q9BVA0 655 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 CHST8Q9H2A9 424 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 EIF3KQ9UBQ5 218 aaKnown RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 POU2F3Q9UKI9 436 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 LCTP09848 1927 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 A0A087WV62 115 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 C7orf72A4D263 438 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF878C9JN71 531 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 FTCDNL1E5RQL4 147 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 RFPL3O75679 317 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 KCNK2O95069 426 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 PPICP45877 212 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 TIAL1Q01085 375 aaKnown RBP eCLIP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 SLC6A19Q695T7 634 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 UNQ6126/PRO20091Q6UXV3 157 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 RBM45Q8IUH3 476 aaKnown RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 BCORP1Q8N888 145 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 LHPPQ9H008 270 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 SIDT1Q9NXL6 827 aaKnown RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 KCNE1BA0A087WTH5 132 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 SPINT1O43278 529 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 LGI1O95970 557 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 PRR35P0CG20 571 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 NOVA1P51513 510 aaKnown RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 RAB40BQ12829 278 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 CARTPTQ16568 116 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 CRIPAKQ8N1N5 446 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 TOMM5Q8N4H5 51 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 SAMD12Q8N8I0 201 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 ARID1BQ8NFD5 2236 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 MYOFQ9NZM1 2061 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 CROCCQ5TZA2 2017 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 TRAV36DV7A0A075B6V5 113 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 KRBA1A5PL33 1030 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 P2RX6O15547 441 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 GATBO75879 557 aaKnown RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 IGHG1P01857 330 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 AQP2P41181 271 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 RIN1Q13671 783 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 PRAMEF17Q5VTA0 474 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 CWF19L1Q69YN2 538 aaKnown RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 TMEM178AQ8NBL3 297 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 CHDHQ8NE62 594 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 OR5AK2Q8NH90 309 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 MMP27Q9H306 513 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 EMC3Q9P0I2 261 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 FARSAQ9Y285 508 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms