RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 GRIK5Q16478 980 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CES4AQ5XG92 561 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 DTWD1Q8N5C7 304 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 NKX3-1Q99801 234 aaPredicted RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 DPH7Q9BTV6 452 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 KCTD3Q9Y597 815 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 COL1A1P02452 1464 aaPredicted RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 MAST2Q6P0Q8 1798 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 TMEM221A6NGB7 291 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 SGK494L7N484 410 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 SIGLEC6O43699 453 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CT45A6P0DMU7 189 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CT45A5P0DMU8 189 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CT45A7P0DMV0 189 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CT45A8P0DMV1 189 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CT45A9P0DMV2 189 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 IRF2P14316 349 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ATP1B3P54709 279 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CT45A2Q5DJT8 189 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CT45A1Q5HYN5 189 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 P4HA3Q7Z4N8 544 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CT45A3Q8NHU0 189 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 HERPUD2Q9BSE4 406 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 HSFX1Q9UBD0 423 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 DUSP11O75319 330 aaKnown RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 CHRNB4P30926 498 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 MC1RQ01726 317 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 OR10Z1Q8NGY1 313 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 SLC41A2Q96JW4 573 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 NSUN3Q9H649 340 aaKnown RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 MAN2C1Q9NTJ4 1040 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 PSORS1C1Q9UIG5 152 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 DNAJC15Q9Y5T4 150 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 TBC1D3EA0A087X179 549 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 LGI1O95970 557 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ITGB2P05107 769 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 RHOP08100 348 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 SRP9P49458 86 aaKnown RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 RABGGTBP53611 331 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CXADRP78310 365 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 PDZK1IP1Q13113 114 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 FAM74A3Q4VXF1 159 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 PAN2Q504Q3 1202 aaKnown RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 FRMPD2BQ6IN97 320 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 DBX2Q6ZNG2 339 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ZDHHC1Q8WTX9 485 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 GMPPAQ96IJ6 420 aaPredicted RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 TOLLIPQ9H0E2 274 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 BPIFA1Q9NP55 256 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 A0A087WUU8 490 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 CYTIPO60759 359 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 SYNGR4O95473 234 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ZBTB48P10074 688 aaPredicted RBP6.76□□□□□ -1.33
VPS53-204ENST00000437048 GIFP27352 417 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ZNF136P52737 540 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ZP2Q05996 745 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 TAC4Q86UU9 113 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 RGL4Q8IZJ4 473 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 KIRREL1Q96J84 757 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ZNF681Q96N22 645 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 ERVMER34-1Q9H9K5 563 aa6.76□□□□□ -1.33
VPS53-204ENST00000437048 UBR2Q8IWV8 1755 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 MYOCOSA0A1B0GUC4 107 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 PEX12O00623 359 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 GZMKP49863 264 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 NRARPQ7Z6K4 114 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ENTHD1Q8IYW4 607 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ADPRHL1Q8NDY3 354 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 SLC12A9Q9BXP2 914 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 RNF181Q9P0P0 153 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 KDM3BQ7LBC6 1761 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 MYO5AQ9Y4I1 1855 aaKnown RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 M0R2N6 131 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 NME4O00746 187 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ABCD4O14678 606 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 PHOX2AO14813 284 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ADAMTS4O75173 837 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TNFSF4P23510 183 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ERVFC1P60507 584 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 CBLL1Q75N03 491 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 SIGLECL1Q8N7X8 197 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 RAB24Q969Q5 203 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ISG20Q96AZ6 181 aaKnown RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 C9JVG2 144 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ST8SIA3O43173 380 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 S1PR4O95977 384 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ACSM3Q53FZ2 586 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 CNKSR3Q6P9H4 555 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 LYSMD2Q8IV50 215 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 NUP43Q8NFH3 380 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 OR9K2Q8NGE7 335 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ZNF331Q9NQX6 463 aaPredicted RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 ZNF226Q9NYT6 803 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 CELF2O95319 508 aaKnown RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 KLK1P06870 262 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 PLA1AQ53H76 456 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 DACT2Q5SW24 774 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 LGI3Q8N145 548 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ISL2Q96A47 359 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms