RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 LYPD3O95274 346 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 NUDT14O95848 222 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 TPOP07202 933 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 PEPDP12955 493 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 NCK1P16333 377 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 MSX2P35548 267 aaPredicted RBP11.18□□□□□ -0.62
USP40-205ENST00000430158 SLC1A3P43003 542 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 C1QL3Q5VWW1 255 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 PGM2L1Q6PCE3 622 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 CBLL1Q75N03 491 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 GRINAQ7Z429 371 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 TSEN54Q7Z6J9 526 aaKnown RBP11.18□□□□□ -0.62
USP40-205ENST00000430158 RBM45Q8IUH3 476 aaKnown RBP11.18□□□□□ -0.62
USP40-205ENST00000430158 ARHGAP24Q8N264 748 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 OR6T1Q8NGN1 323 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 PRR7Q8TB68 274 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 ZPLD1Q8TCW7 415 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 C3orf49Q96BT1 292 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 TUBA1CQ9BQE3 449 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 PCDHAC1Q9H158 963 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 EVA1AQ9H8M9 152 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 GORASP2Q9H8Y8 452 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 CTPS2Q9NRF8 586 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 EGFL7Q9UHF1 273 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 ERRFI1Q9UJM3 462 aaPredicted RBP11.18□□□□□ -0.62
USP40-205ENST00000430158 MEMO1Q9Y316 297 aa11.18□□□□□ -0.62
USP40-205ENST00000430158 COL12A1Q99715 3063 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 A0A0J9YW62 118 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 E9PLN8 166 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 M0R3H8 397 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 PRRG2O14669 202 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 FMO6PO60774 539 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 WDR1O75083 606 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 THY1P04216 161 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 GP1BBP13224 206 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 ACVR2AP27037 513 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 APOBEC1P41238 236 aaKnown RBP11.17□□□□□ -0.62
USP40-205ENST00000430158 SELENOWP63302 87 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 MS4A2Q01362 244 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 MERTKQ12866 999 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 ACSF3Q4G176 576 aaPredicted RBP11.17□□□□□ -0.62
USP40-205ENST00000430158 C4orf17Q53FE4 359 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 WLSQ5T9L3 541 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 GLYATQ6IB77 296 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 WBP2NLQ6ICG8 309 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 ENPP6Q6UWR7 440 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 C3P1Q6ZMU1 363 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 ATG4DQ86TL0 474 aaPredicted RBP11.17□□□□□ -0.62
USP40-205ENST00000430158 PM20D2Q8IYS1 436 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 LILRA2Q8N149 483 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 OR52E4Q8NGH9 312 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 OR10Q1Q8NGQ4 319 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 TMEM234Q8WY98 164 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 FIG4Q92562 907 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 VKORC1Q9BQB6 163 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 TP63Q9H3D4 680 aaPredicted RBP11.17□□□□□ -0.62
USP40-205ENST00000430158 ARMC7Q9H6L4 198 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 COQ10BQ9H8M1 238 aa11.17□□□□□ -0.62
USP40-205ENST00000430158 DCAF13Q9NV06 445 aaKnown RBP11.17□□□□□ -0.62
USP40-205ENST00000430158 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.17□□□□□ -0.62
USP40-205ENST00000430158 A0A0B4J2E0 115 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 TRGV8A0A0C4DH27 118 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 A0A1B0GWA3 101 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 A0A1B0GX12 115 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 FAM47E-STBD1D6RA91 191 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 H3BML4 177 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 ARPC2O15144 300 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 LRRTM2O43300 516 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 NPIPB7O75200 414 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 TOXO94900 526 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 IFNA14P01570 189 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 OPN1LWP04000 364 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 HOXD4P09016 255 aaPredicted RBP11.16□□□□□ -0.62
USP40-205ENST00000430158 RNF224P0DH78 156 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 GLI4P10075 376 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 POU3F2P20265 443 aaPredicted RBP11.16□□□□□ -0.62
USP40-205ENST00000430158 TNFRSF1BP20333 461 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 TACR3P29371 465 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 PTGER4P35408 488 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 RGS8P57771 180 aaPredicted RBP11.16□□□□□ -0.62
USP40-205ENST00000430158 MXRA7P84157 204 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 ADORA2A-AS1P86434 159 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 SELENBP1Q13228 472 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 IQCCQ4KMZ1 466 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 LRRC23Q53EV4 343 aaPredicted RBP11.16□□□□□ -0.62
USP40-205ENST00000430158 C1orf185Q5T7R7 199 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 NSUN5P2Q63ZY6 315 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 ZNF585AQ6P3V2 769 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 LINC00114Q6XXX2 140 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 NCCRP1Q6ZVX7 275 aaPredicted RBP11.16□□□□□ -0.62
USP40-205ENST00000430158 VTCN1Q7Z7D3 282 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 FAM86B1Q8N7N1 296 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 TNIP2Q8NFZ5 429 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 ZNF563Q8TA94 476 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 RASSF5Q8WWW0 418 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 CLPTM1LQ96KA5 538 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 ZNF559Q9BR84 538 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 BTBD10Q9BSF8 475 aa11.16□□□□□ -0.62
USP40-205ENST00000430158 CADM1Q9BY67 442 aaKnown RBP11.16□□□□□ -0.62
USP40-205ENST00000430158 TMEM185BQ9H7F4 350 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms