RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 RFC4P35249 363 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 PRRX1P54821 245 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 LIM2P55344 173 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 B2MP61769 119 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 VLDLRP98155 873 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 KLRC3Q07444 240 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 ELAVL2Q12926 359 aaKnown RBP3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 PLD1Q13393 1074 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 CYLC2Q14093 348 aaPredicted RBP3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 PPP1R3AQ16821 1122 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 TEX44Q53QW1 395 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 ZNF506Q5JVG8 444 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 C1orf220Q5T0J3 134 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 PRAMEF20Q5VT98 475 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 OR2A2Q6IF42 318 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 TRIM69Q86WT6 500 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 ALLCQ8N6M5 410 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 FAM83FQ8NEG4 500 aaPredicted RBP3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 C17orf47Q8NEP4 570 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 OR2T33Q8NG76 320 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 OR52K1Q8NGK4 314 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 OR1L4Q8NGR5 311 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 C10orf35Q96D05 121 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 CATSPER2Q96P56 530 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 COPS8Q99627 209 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 SH3GL3Q99963 347 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 ZNF670Q9BS34 389 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 MCRIP2Q9BUT9 160 aaKnown RBP3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 NSRP1Q9H0G5 558 aaKnown RBP3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 OPN3Q9H1Y3 402 aaPredicted RBP3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 CLSTN2Q9H4D0 955 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 POLE4Q9NR33 117 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 IL20Q9NYY1 176 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 SAMD4AQ9UPU9 718 aaKnown RBP3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 C15orf41Q9Y2V0 281 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 L3MBTL1Q9Y468 752 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 NPTNQ9Y639 398 aa3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 RPAP1Q9BWH6 1393 aaPredicted RBP3.88□□□□□ -1.79
HMGB1P13-201ENST00000406019 SLC17A2O00624 439 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 RAMP3O60896 148 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 SLITRK3O94933 977 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 YEATS4O95619 227 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 RENP00797 406 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 AGTP01019 485 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 ALPIP09923 528 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 H2AFZP0C0S5 128 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 OXTRP30559 389 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 ACVR1BP36896 505 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 ARHGDIBP52566 201 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 ATP1B3P54709 279 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 PUDPQ08623 228 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 CD300CQ08708 224 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 DOC2AQ14183 400 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 LPAL2Q16609 132 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 MICAQ29983 383 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 BCL7AQ4VC05 210 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 LIPNQ5VXI9 398 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 MEDAGQ5VYS4 303 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 KDM7AQ6ZMT4 941 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 TMUB2Q71RG4 321 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 SPATA24Q86W54 205 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 CCDC50Q8IVM0 306 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 CD302Q8IX05 232 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 OR4D9Q8NGE8 314 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 ARNTL2Q8WYA1 636 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 ST8SIA1Q92185 356 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 RAPGEF5Q92565 580 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 EFHD2Q96C19 240 aaPredicted RBP3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 CELF6Q96J87 481 aaKnown RBP3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 LLPHQ9BRT6 129 aaKnown RBP3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 ZBP1Q9H171 429 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 PARVGQ9HBI0 331 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 PISDQ9UG56 409 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 MUTYHQ9UIF7 546 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 KIAA1257Q9ULG3 409 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 CA5BQ9Y2D0 317 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 MMP24Q9Y5R2 645 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 MROH5Q6ZUA9 1318 aa3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 TDRD15B5MCY1 1934 aaKnown RBP3.87□□□□□ -1.79
HMGB1P13-201ENST00000406019 GOLGA6L7A0A1B0GV03 622 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 BTBD17A6NE02 478 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 ZNF487B1APH4 448 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 POLR2DO15514 142 aaKnown RBP3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 CLDN9O95484 217 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 CRYGBP07316 175 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 TPM1P09493 284 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 RHOXF2BP0C7M4 288 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 ETS2P15036 469 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 CHMLP26374 656 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 EVI2BP34910 448 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 RPL13AP40429 203 aaKnown RBP3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 CRYBB1P53674 252 aaPredicted RBP3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 HSPA2P54652 639 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 ERVPABLB-1P60509 514 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 RPS8P62241 208 aaKnown RBP3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 GNA13Q14344 377 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 ABRAXAS2Q15018 415 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 LTB4RQ15722 352 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 CNPY1Q3B7I2 92 aa3.86□□□□□ -1.79
HMGB1P13-201ENST00000406019 C1orf185Q5T7R7 199 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms