RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RANBP3LQ86VV4 465 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-202ENST00000394943 SPPL2CQ8IUH8 684 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 FIG4Q92562 907 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 WNT2BQ93097 391 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 SNX18Q96RF0 628 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 NPAS1Q99742 590 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 VKORC1Q9BQB6 163 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 ARHGAP9Q9BRR9 750 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 QRSL1Q9H0R6 528 aaKnown RBP6.31□□□□□ -1.4
LIMA1-202ENST00000394943 OSGIN1Q9UJX0 560 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 PACSIN3Q9UKS6 424 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 CARD8Q9Y2G2 431 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 FAM215AQ9Y5M1 114 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 SPIN1Q9Y657 262 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-202ENST00000394943 CNOT1A5YKK6 2376 aaKnown RBP6.31□□□□□ -1.4
LIMA1-202ENST00000394943 C5orf58C9J3I9 102 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 H3BNX3 289 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 GYG2O15488 501 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 CYTIPO60759 359 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 RCBTB2O95199 551 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 CNOT4O95628 575 aaKnown RBP6.31□□□□□ -1.4
LIMA1-202ENST00000394943 SERPINA1P01009 418 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 CGAP01215 116 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 CELA3AP09093 270 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 ASAH2BP0C7U1 165 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 RAP2AP10114 183 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 IL7RP16871 459 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 SLC7A1P30825 629 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 FOXF1Q12946 379 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 LY6DQ14210 128 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 TOMM34Q15785 309 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-202ENST00000394943 DCST1Q5T197 706 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 WDR88Q6ZMY6 472 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 CPT1CQ8TCG5 803 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 RNF128Q8TEB7 428 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 DNAJC9Q8WXX5 260 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 SARAFQ96BY9 339 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 HSH2DQ96JZ2 352 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 DGCR6LQ9BY27 220 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 MED11Q9P086 117 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 SEC14L3Q9UDX4 400 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 HEATR5AQ86XA9 2040 aa6.31□□□□□ -1.4
LIMA1-202ENST00000394943 NPIPA5A0A0B4J1W7 369 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 CLDN24A6NM45 220 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 NPIPA7E9PJI5 369 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 FRS3O43559 492 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 WISP2O76076 250 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 NPIPA8P0DM63 369 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 PRG2P13727 222 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 ITGA2P17301 1181 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 UQCRC1P31930 480 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 CPA2P48052 419 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 RAC3P60763 192 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 ACSF3Q4G176 576 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-202ENST00000394943 ENTPD8Q5MY95 495 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 OLIG3Q7RTU3 272 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 GDF7Q7Z4P5 450 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 CARM1Q86X55 608 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 DHFR2Q86XF0 187 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 SLC47A1Q96FL8 570 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 OTUB1Q96FW1 271 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-202ENST00000394943 GNRHR2Q96P88 292 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 MRPL39Q9NYK5 338 aaKnown RBP6.3□□□□□ -1.4
LIMA1-202ENST00000394943 CHRNA9Q9UGM1 479 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 SLC9A8Q9Y2E8 581 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 NBEAQ8NFP9 2946 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 A0A1B0GWA3 101 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 LIPT2A6NK58 231 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 C17orf51A8MQB3 221 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 A8MVM7 634 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 KRT36O76013 467 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 IMPDH2P12268 514 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 TAF11Q15544 211 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 C4orf17Q53FE4 359 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 MARVELD2Q8N4S9 558 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 FAM86B1Q8N7N1 296 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 PHOSPHO1Q8TCT1 267 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 ABTB1Q969K4 478 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-202ENST00000394943 PIP5K1AQ99755 562 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 ASF1BQ9NVP2 202 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF229Q9UJW7 825 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 SEC14L5O43304 696 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 PTP4A3O75365 173 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 GOSR1O95249 250 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 TXNDC12O95881 172 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 NQO1P15559 274 aaKnown RBP6.3□□□□□ -1.4
LIMA1-202ENST00000394943 GSSP48637 474 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF41P51814 821 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-202ENST00000394943 OC90Q02509 493 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-202ENST00000394943 MFSD13AQ14CX5 517 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 HIST3H3Q16695 136 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 PRAMEF20Q5VT98 475 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 ZFP1Q6P2D0 407 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 FOXL2NBQ6ZUU3 175 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 IFNEQ86WN2 208 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 TEX19Q8NA77 164 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 OR4K17Q8NGC6 315 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 LZICQ8WZA0 190 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 NSMCE2Q96MF7 247 aa6.3□□□□□ -1.4
LIMA1-202ENST00000394943 TP63Q9H3D4 680 aaPredicted RBP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms