RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 LSRQ86X29 649 aaPredicted RBP16.9■□□□□ 0.3
CKS1B-203ENST00000368439 CDC20BQ86Y33 519 aa16.9■□□□□ 0.3
CKS1B-203ENST00000368439 C10orf111Q8N326 155 aa16.9■□□□□ 0.3
CKS1B-203ENST00000368439 TMEM19Q96HH6 336 aa16.9■□□□□ 0.3
CKS1B-203ENST00000368439 LIME1Q9H400 295 aa16.9■□□□□ 0.3
CKS1B-203ENST00000368439 CTPS2Q9NRF8 586 aa16.9■□□□□ 0.3
CKS1B-203ENST00000368439 CHST2Q9Y4C5 530 aa16.9■□□□□ 0.3
CKS1B-203ENST00000368439 GMEB1Q9Y692 573 aa16.9■□□□□ 0.3
CKS1B-203ENST00000368439 CELSR1Q9NYQ6 3014 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 FAAHO00519 579 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 SMAD9O15198 467 aaKnown RBP16.89■□□□□ 0.29
CKS1B-203ENST00000368439 GOSR1O95249 250 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 PABPC4LP0CB38 370 aaKnown RBP16.89■□□□□ 0.29
CKS1B-203ENST00000368439 POU2F1P14859 743 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 IL7RP16871 459 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 SLC7A1P30825 629 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 DNAJA1P31689 397 aaKnown RBP16.89■□□□□ 0.29
CKS1B-203ENST00000368439 APOBEC1P41238 236 aaKnown RBP16.89■□□□□ 0.29
CKS1B-203ENST00000368439 IDH2P48735 452 aaKnown RBP16.89■□□□□ 0.29
CKS1B-203ENST00000368439 CRISP3P54108 245 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 EPS8Q12929 822 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 RNPS1Q15287 305 aaKnown RBP16.89■□□□□ 0.29
CKS1B-203ENST00000368439 AGKQ53H12 422 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 SYT14P1Q58G82 188 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 RPS26P11Q5JNZ5 115 aaPredicted RBP16.89■□□□□ 0.29
CKS1B-203ENST00000368439 GTF2IRD2BQ6EKJ0 949 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 ZNF836Q6ZNA1 936 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 C22orf34Q6ZV56 151 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 GTF2IRD2Q86UP8 949 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 VRK2Q86Y07 508 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 ADGRG3Q86Y34 549 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 OR52P1PQ8NH57 321 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 ZNF563Q8TA94 476 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 WFIKKN1Q96NZ8 548 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 SLC39A3Q9BRY0 314 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 GP6Q9HCN6 339 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 RLIMQ9NVW2 624 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 THUMPD1Q9NXG2 353 aaKnown RBP16.89■□□□□ 0.29
CKS1B-203ENST00000368439 CALML5Q9NZT1 146 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 VAPAQ9P0L0 249 aa16.89■□□□□ 0.29
CKS1B-203ENST00000368439 IGHV3-15A0A0B4J1V0 119 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 A0A0G2JPF8 293 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 A0A1W2PPR1 153 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 CDHR4A6H8M9 788 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 HNRNPCL2B2RXH8 293 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 HNRNPCL3B7ZW38 293 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 HNRNPCL1O60812 293 aaKnown RBP16.88■□□□□ 0.29
CKS1B-203ENST00000368439 PRKD3O94806 890 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 HRGP04196 525 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 HNRNPCL4P0DMR1 293 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 FADDQ13158 208 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 TMPPEQ6ZT21 453 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 TUSC5Q8IXB3 177 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 PEX5LQ8IYB4 626 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 SLC25A43Q8WUT9 341 aaPredicted RBP16.88■□□□□ 0.29
CKS1B-203ENST00000368439 OR5B2Q96R09 309 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 PSD2Q9BQI7 771 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 BCL2L10Q9HD36 194 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 NPHS2Q9NP85 383 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 A4GALTQ9NPC4 353 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 SERINC1Q9NRX5 453 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 KLHL13Q9P2N7 655 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 CHRNA9Q9UGM1 479 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 NDRG3Q9UGV2 375 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 DCTN4Q9UJW0 460 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 ITGB1BP2Q9UKP3 347 aa16.88■□□□□ 0.29
CKS1B-203ENST00000368439 A0A1W2PP18 115 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 C16orf97H3BN30 126 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 SIAH2O43255 324 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 ACAA2P42765 397 aaKnown RBP16.87■□□□□ 0.29
CKS1B-203ENST00000368439 DIO1P49895 249 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 GNA13Q14344 377 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 LIN52Q52LA3 116 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 RNF220Q5VTB9 566 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 NUFIP2Q7Z417 695 aaKnown RBP16.87■□□□□ 0.29
CKS1B-203ENST00000368439 SLC43A2Q8N370 569 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 MAL2Q969L2 176 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 REXO5Q96IC2 774 aaKnown RBP16.87■□□□□ 0.29
CKS1B-203ENST00000368439 ARL5BQ96KC2 179 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 SIKE1Q9BRV8 207 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 RSPO3Q9BXY4 272 aaPredicted RBP16.87■□□□□ 0.29
CKS1B-203ENST00000368439 RAD21L1Q9H4I0 556 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 IKZF5Q9H5V7 419 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 BCO1Q9HAY6 547 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 KLHL28Q9NXS3 571 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 OSGIN1Q9UJX0 560 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 ZNF443Q9Y2A4 671 aaPredicted RBP16.87■□□□□ 0.29
CKS1B-203ENST00000368439 PRR14LQ5THK1 2151 aa16.87■□□□□ 0.29
CKS1B-203ENST00000368439 CFAP73A6NFT4 308 aa16.86■□□□□ 0.29
CKS1B-203ENST00000368439 CYTIPO60759 359 aa16.86■□□□□ 0.29
CKS1B-203ENST00000368439 THBS1P07996 1170 aa16.86■□□□□ 0.29
CKS1B-203ENST00000368439 KCNJ5P48544 419 aa16.86■□□□□ 0.29
CKS1B-203ENST00000368439 EXOC3L2Q2M3D2 409 aa16.86■□□□□ 0.29
CKS1B-203ENST00000368439 PRAMEF8Q5VWM4 474 aa16.86■□□□□ 0.29
CKS1B-203ENST00000368439 PRAMEF7Q5VXH5 474 aa16.86■□□□□ 0.29
CKS1B-203ENST00000368439 DLEU7Q6UYE1 221 aa16.86■□□□□ 0.29
CKS1B-203ENST00000368439 TFAP2EQ6VUC0 442 aa16.86■□□□□ 0.29
CKS1B-203ENST00000368439 STAC2Q6ZMT1 411 aa16.86■□□□□ 0.29
CKS1B-203ENST00000368439 ZNF550Q7Z398 422 aa16.86■□□□□ 0.29
CKS1B-203ENST00000368439 CLIP4Q8N3C7 705 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms