RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 SPARCP09486 303 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 APEX1P27695 318 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 PRDX3P30048 256 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 CD70P32970 193 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 P2RY6Q15077 328 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 CDONQ4KMG0 1287 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 EIF5AL1Q6IS14 154 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 C6orf89Q6UWU4 347 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 PARS2Q7L3T8 475 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 GTSCR1Q86UQ5 136 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 MAML2Q8IZL2 1156 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 UMODL1-AS1Q8N2C9 162 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 OR2T27Q8NH04 317 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 FBXO27Q8NI29 283 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SYNPRQ8TBG9 265 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 CT55Q8WUE5 264 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 PTPMT1Q8WUK0 201 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 CYGBQ8WWM9 190 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 RCN3Q96D15 328 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 C1GALT1C1Q96EU7 318 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 CDKN2AIPNLQ96HQ2 116 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 BTF3L4Q96K17 158 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ZMAT3Q9HA38 289 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 NTN4Q9HB63 628 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 TCF7L2Q9NQB0 619 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 DAPP1Q9UN19 280 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 PCDHGA9Q9Y5G4 932 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 ACACAQ13085 2346 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 BRWD1Q9NSI6 2320 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 NPIPA5A0A0B4J1W7 369 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 A0A1W2PRQ8 180 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 NPEPPSL1A6NEC2 478 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 MAGEB17A8MXT2 336 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 NARSO43776 548 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 CTNSO60931 367 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 MTX2O75431 263 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 HTR1AP08908 422 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 CHRM1P11229 460 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 ATF6P18850 670 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 IDH2P48735 452 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 HERVK_113P63132 956 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ERVK-8P63133 956 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ARF1P84077 181 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 GALNT2Q10471 571 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ZNF239Q16600 458 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 MICBQ29980 383 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SMIM21Q3B7S5 101 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 OR2V1Q8NHB1 315 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SCGB1C1Q8TD33 95 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SLC37A2Q8TED4 501 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 AENQ8WTP8 325 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 HSD17B8Q92506 261 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SLAMF9Q96A28 289 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 HBEGFQ99075 208 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ERVK-6Q9BXR3 956 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 TXLNGYQ9BZA5 131 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 FBXO2Q9UK22 296 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 ERVK-19Q9WJR5 959 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 CLDN24A6NM45 220 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 C11orf98E9PRG8 122 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ABLIM3O94929 683 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 HLA-HP01893 362 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 CHRM5P08912 532 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 FBP1P09467 338 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 CPEP16870 476 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 TAS2R43P59537 309 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ID2Q02363 134 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ZNF763Q0D2J5 394 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 CRMP1Q14194 572 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ZNF260Q3ZCT1 412 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ENTPD8Q5MY95 495 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 GPR139Q6DWJ6 353 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 LCN8Q6JVE9 175 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 GCNT7Q6ZNI0 430 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 Q6ZS52 159 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 LRRC55Q6ZSA7 311 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 DTX2Q86UW9 622 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SLC25A42Q86VD7 318 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SLC35F6Q8N357 371 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 CLDN22Q8N7P3 220 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ACOT4Q8N9L9 421 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 FAM47BQ8NA70 645 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 TP53I13Q8NBR0 393 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 OR52E1Q8NGJ3 308 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SIGLEC12Q96PQ1 595 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 FBXO8Q9NRD0 319 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 OGFRQ9NZT2 677 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 MALT1Q9UDY8 824 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 OR14J1Q9UGF5 321 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 MAGEL2Q9UJ55 1249 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ADGRB1O14514 1584 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 A0A075B6Q4 140 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 C13orf42A0A1B0GVH6 325 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 RPS10-NUDT3A0A1W2PQS6 291 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 EIF4E2O60573 245 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 PTBP3O95758 552 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 KLK1P06870 262 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 RAP2AP10114 183 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 NPR2P20594 1047 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 DDOSTP39656 456 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms