RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TMEM220Q6QAJ8 160 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 MBOAT2Q6ZWT7 520 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 SLC36A1Q7Z2H8 476 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 RNF180Q86T96 592 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 OR9A1PQ8NGU1 263 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 OR6K3Q8NGY3 331 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 C2orf15Q8WU43 125 aaKnown RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 SCLYQ96I15 445 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 OR14A2Q96R54 314 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 TEAD3Q99594 435 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 ADAT1Q9BUB4 502 aaKnown RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 WDR13Q9H1Z4 485 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 OR52D1Q9H346 318 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 ACSS1Q9NUB1 689 aaPredicted RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 KLHL9Q9P2J3 617 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 NFKBIL1Q9UBC1 381 aaPredicted RBP6.29□□□□□ -1.4
VPS39-202ENST00000348544 MLXQ9UH92 298 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 PLAGL1Q9UM63 463 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 LHX6Q9UPM6 363 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 MOKQ9UQ07 419 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 IRAK3Q9Y616 596 aa6.29□□□□□ -1.4
VPS39-202ENST00000348544 A0A0G2JPF8 293 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 GLOD5A6NK44 160 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 HNRNPCL3B7ZW38 293 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 SYT5O00445 386 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 DUSP11O75319 330 aaKnown RBP6.28□□□□□ -1.4
VPS39-202ENST00000348544 ITGA10O75578 1167 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 ECDO95905 644 aaPredicted RBP6.28□□□□□ -1.4
VPS39-202ENST00000348544 CKMP06732 381 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 SBK2P0C263 348 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 HNRNPCL4P0DMR1 293 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 AKR1A1P14550 325 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 ACHEP22303 614 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 DPP4P27487 766 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 OR1D2P34982 312 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 P2RX1P51575 399 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 HCCSP53701 268 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 CLDN12P56749 244 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 PPP2CBP62714 309 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 PPP2CAP67775 309 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 TMEM115Q12893 351 aaPredicted RBP6.28□□□□□ -1.4
VPS39-202ENST00000348544 AGERQ15109 404 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 TP53I3Q53FA7 332 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 PRAMEF13Q5VWM6 474 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 ELP2Q6IA86 826 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 ZNF613Q6PF04 617 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 THSD4Q6ZMP0 1018 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 UBE3DQ7Z6J8 389 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 LDLRAD3Q86YD5 345 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 CBLN2Q8IUK8 224 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 PUSL1Q8N0Z8 303 aaKnown RBP6.28□□□□□ -1.4
VPS39-202ENST00000348544 TRAM1L1Q8N609 369 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 MYLIPQ8WY64 445 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 ARMC5Q96C12 935 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 SLC41A3Q96GZ6 507 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 DPH1Q9BZG8 443 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 OR51V1Q9H2C8 321 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 SLC25A32Q9H2D1 315 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 FN3KQ9H479 309 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 ELAC1Q9H777 363 aaKnown RBP6.28□□□□□ -1.4
VPS39-202ENST00000348544 GPN1Q9HCN4 374 aaPredicted RBP6.28□□□□□ -1.4
VPS39-202ENST00000348544 RASL12Q9NYN1 266 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 PLEKHM1Q9Y4G2 1056 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 FEZF1A0PJY2 475 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 PQLC2LA1A4F0 135 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 OR6C74A6NCV1 312 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 NEDD8-MDP1E9PL57 170 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 F5H5P2 479 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 GOSR2O14653 212 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 PIN1P1O15428 100 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 FMO6PO60774 539 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 SNAPC5O75971 98 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 ATG12O94817 140 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 APOC1P02654 83 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 MAKP20794 623 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 SLC2A5P22732 501 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 FNTBP49356 437 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 GDI2P50395 445 aaKnown RBP6.28□□□□□ -1.4
VPS39-202ENST00000348544 NCBP2P52298 156 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS39-202ENST00000348544 SLC16A1P53985 500 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 TAS2R43P59537 309 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 SORDQ00796 357 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 MLC1Q15049 377 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 GUCA2BQ16661 112 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 PRAMEF14Q5SWL7 426 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 LRRN1Q6UXK5 716 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 WDR88Q6ZMY6 472 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 Q6ZVU0 165 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 MOB3CQ70IA8 216 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 CFAP206Q8IYR0 622 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 ARL14EPQ8N8R7 260 aaPredicted RBP6.28□□□□□ -1.4
VPS39-202ENST00000348544 BOLLQ8N9W6 283 aaKnown RBP6.28□□□□□ -1.4
VPS39-202ENST00000348544 DNAAF1Q8NEP3 725 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 SMPDL3BQ92485 455 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 SLC39A7Q92504 469 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 GLYATL1Q969I3 302 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 LRIG1Q96JA1 1093 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 MCHR1Q99705 422 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 TRMT61BQ9BVS5 477 aaKnown RBP6.28□□□□□ -1.4
VPS39-202ENST00000348544 CPEB1Q9BZB8 566 aaKnown RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms