RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 OGFOD3Q6PK18 319 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 SDR9C7Q8NEX9 313 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 MARC2Q969Z3 335 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 CHRDQ9H2X0 955 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 A0A0G2JLL6 359 aaPredicted RBP13.03□□□□□ -0.32
CSPG4-201ENST00000308508 ZIC2O95409 532 aaPredicted RBP13.03□□□□□ -0.32
CSPG4-201ENST00000308508 JUNDP17535 347 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 F2RL1P55085 397 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 SHC2P98077 582 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 GAB1Q13480 694 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 PRRT2Q7Z6L0 340 aaPredicted RBP13.03□□□□□ -0.32
CSPG4-201ENST00000308508 USB1Q9BQ65 265 aaKnown RBP13.03□□□□□ -0.32
CSPG4-201ENST00000308508 HCAR1Q9BXC0 346 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 PIGMQ9H3S5 423 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 POLHQ9Y253 713 aa13.03□□□□□ -0.32
CSPG4-201ENST00000308508 SEC14L5O43304 696 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 RAD1O60671 282 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 PTGER4P35408 488 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 PSMB10P40306 273 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 SEC61A1P61619 476 aaKnown RBP13.02□□□□□ -0.32
CSPG4-201ENST00000308508 RAB11AP62491 216 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 PIP5KL1Q5T9C9 394 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 LRRC56Q8IYG6 542 aaPredicted RBP13.02□□□□□ -0.32
CSPG4-201ENST00000308508 IRF7Q92985 503 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 RADILQ96JH8 1075 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 IGSF5Q9NSI5 407 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 USP36Q9P275 1121 aaKnown RBP13.02□□□□□ -0.32
CSPG4-201ENST00000308508 FBXL2Q9UKC9 423 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 WIF1Q9Y5W5 379 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 BTBD17A6NE02 478 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 GCH1P30793 250 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 ERVFC1P60507 584 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 ZNF92Q03936 586 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 FAM182AQ5T1J6 154 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 ZNF551Q7Z340 670 aaPredicted RBP13.02□□□□□ -0.32
CSPG4-201ENST00000308508 OSTM1Q86WC4 334 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 CMSS1Q9BQ75 279 aaKnown RBP13.02□□□□□ -0.32
CSPG4-201ENST00000308508 MROH1Q8NDA8 1641 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 SEC14L6B5MCN3 397 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 SLURP2P0DP57 97 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 PSMB3P49720 205 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 EMP2P54851 167 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 HSD17B7P56937 341 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 HNF4GQ14541 408 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 DUSP6Q16828 381 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 PSAPL1Q6NUJ1 521 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 GCNT2Q8N0V5 402 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 YIPF5Q969M3 257 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 OR5B2Q96R09 309 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 LIN7BQ9HAP6 207 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 MARCH4Q9P2E8 410 aaPredicted RBP13.02□□□□□ -0.32
CSPG4-201ENST00000308508 KLHL42Q9P2K6 505 aa13.02□□□□□ -0.32
CSPG4-201ENST00000308508 FMN2Q9NZ56 1722 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 OR2T1O43869 369 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 SORBS2O94875 1100 aaKnown RBP13.02□□□□□ -0.33
CSPG4-201ENST00000308508 MT-ND4LP03901 98 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 ECI1P42126 302 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 LY6G5CQ5SRR4 150 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 MFSD6LQ8IWD5 586 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 DUSP19Q8WTR2 217 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 TANKQ92844 425 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 PEX11GQ96HA9 241 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 UBL7Q96S82 380 aaPredicted RBP13.02□□□□□ -0.33
CSPG4-201ENST00000308508 NKX3-1Q99801 234 aaPredicted RBP13.02□□□□□ -0.33
CSPG4-201ENST00000308508 C1GALT1Q9NS00 363 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 OSGIN1Q9UJX0 560 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 C2orf78A6NCI8 922 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 LALBAP00709 142 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 ZMAT1Q5H9K5 638 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 PAGE3Q5JUK9 113 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 RPL22L1Q6P5R6 122 aaKnown RBP13.02□□□□□ -0.33
CSPG4-201ENST00000308508 SCAMP4Q969E2 229 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 CPNE4Q96A23 557 aaPredicted RBP13.02□□□□□ -0.33
CSPG4-201ENST00000308508 NXF5Q9H1B4 397 aaKnown RBP13.02□□□□□ -0.33
CSPG4-201ENST00000308508 GPR34Q9UPC5 381 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 FABP7O15540 132 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 CHRNB4P30926 498 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 FLI1Q01543 452 aaPredicted RBP13.02□□□□□ -0.33
CSPG4-201ENST00000308508 GRM2Q14416 872 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 ELAVL3Q14576 367 aaKnown RBP13.02□□□□□ -0.33
CSPG4-201ENST00000308508 TMEM31Q5JXX7 168 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 COX15Q7KZN9 410 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 FCRLAQ7L513 359 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 KDM1BQ8NB78 822 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 OR7G3Q8NG95 312 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 OR10R2Q8NGX6 335 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 C14orf79Q96F83 325 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 LMF2Q9BU23 707 aaKnown RBP13.02□□□□□ -0.33
CSPG4-201ENST00000308508 PRAMEF27A3QJZ7 478 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 SLC43A1O75387 559 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 TRHRP34981 398 aaPredicted RBP13.02□□□□□ -0.33
CSPG4-201ENST00000308508 UBE2G2P60604 165 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 ZXDBP98169 803 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 PRAMEF9Q5VWM5 478 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 HBMQ6B0K9 141 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 LETMD1Q6P1Q0 360 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 OR14L1PQ8NHC6 308 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 BPIFA2Q96DR5 249 aa13.02□□□□□ -0.33
CSPG4-201ENST00000308508 MYH14Q7Z406 1995 aaKnown RBP13.01□□□□□ -0.33
CSPG4-201ENST00000308508 IGKV6D-41A0A0C4DH26 115 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms